| Definition | Natranaerobius thermophilus JW/NM-WN-LF, complete genome. |
|---|---|
| Accession | NC_010718 |
| Length | 3,165,557 |
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The map label for this gene is recJ [H]
Identifier: 188585913
GI number: 188585913
Start: 1356478
End: 1358973
Strand: Direct
Name: recJ [H]
Synonym: Nther_1287
Alternate gene names: 188585913
Gene position: 1356478-1358973 (Clockwise)
Preceding gene: 188585912
Following gene: 188585914
Centisome position: 42.85
GC content: 35.02
Gene sequence:
>2496_bases ATGGATGGACAGGCAGTTAAATGGAATATAAAAACCGATTATTCGGAGACAGCTAAAGAATTAGCTAATTCTTGTAATAT TTCTACAGTCCTAGCTCAATTGTTAGTCAATAGAGGTGTTACTACCCCCGAACAGGTAGCTGATTTTTTAAATCCCTCTT TTGATTCTTTGCATTCTCCCTGGTTGTTACCTGATATGAAACAGGCTGTTGAATTGATTGATAAAATTATAAAATCCAAT GAGCCGATATTAATTTATGGAGATTACGATGCAGACGGTGTGACAGCCACGGCTTTATTATACGAATATCTATCTACTAA GTTTGATAATATATATTATTACATTCCCGATCGTTTCAAAGATGGTTATGGTTTAACCAATGCAGGTGTTAATTCCGTAT TGGAAAGATTTCCTCAATGCAAATTAATTATCACCGTGGATTGCGGAATCAATTCAATTCAAGAGATCGAAGAACTCAAT CGTCTTGGCAAAAAGGTGATAGTTACTGACCATCACGAACAACTTGGTGATTTGCCTTCTGCCCACGCAGTTATTAATCC TAAAATCCACACTACAAACTATCCCTTTAAATATCTGGCAGGAGTGGGTGTAGCATTTAAACTAGTGAGTGCTCTAGCTG AACAAATAGAAACTCACTATGATTTTAATGAACTGTTGAAGCAGTATCTGGACTTGGTCACTATTGGCACAATTGCTGAT TTAGTGCCTTTAACTAGTGAAAACAGGATTTTTGTATCAAAGGGATTACAATATATTGATGAAAGAAGACCTGGAATGAA AGCTCTTATGGATTTATTAGGACTTGAATACGGAGAAGTTAAAGCAGGACAGGTCGGATTCGTTATCGGTCCCAGGATAA ATGCTGCAGGTAGATTGGCATCCGCGGATGAAGCTGTACAACTCCTAACAGAGAGTTCAGAATCTGCTGCGCGTGAACTT GCAAAAAAACTTGATAAAGAAAATAGAGAGAGGCAAAAGGTTGAACAAAAGATTACTAAAGAAGCAGACGAGATGATTAA TCGCAATAATTTGCTTGCTCGTGGACCTGTTTTAGTTGTTTGGAGCGAAAATTGGCATGAAGGGGTAGTAGGAATTGTCG CCTCTAGATTACTTGAAAAATATTATCGCCCCGTAATAGTGTTGACAAGGGACGATGAACCCGGCAAGTTAAAGGGTTCC TGTAGAAGTATTTCAGGTTTTAACATGGCAGAAGCTTTAAAAAGCTGTGATAATTTATTGATAAAATACGGAGGACATGA ACTGGCAGCCGGTTTAAAATTAGAATCGGCTCATCTAGATGAGTTTATTAAACAGATGAATCATCTGGCTCAAAAGTGGC TTTCAGAAGATGACTTATTGCCGTCTATTGATATAGATATGGAAATTCCCGAGGAAGCTTTAACTAGGGAACTAGCAGAA GAAATTTCCCAATTAGAGCCTTTTGGCATGGGTAATCCTCAACCCGTCATTGGCTGTGGACATATTCAAGTCGCTTCTAC TAGAGAAGTGGGTAAAAGCTCTGAACACTTGCAAATAAAATTTAAAAATAATATGGGTGTACTTGACGGTATTTGGTTTA AAGGAGCAGAAAAAGCTAAAGAAAAAAATATTAAAACAGGTATGCCTGTTCAAGCAGCTTTTATTCCTAAGATATCTACT TTTAAATCCAAATCAAGTAAAGGACATTTGAGCTTGCAATTATGTGATATGCAGCTTCCTGACAACCAAGCAAATATTTT AAGAGACTGTCGCAATTATTCCAAGGGAAAAACTATCAAAAATTTGCTAAATGAAAAGTATAGTACAGTTATTCTCGTAA ATAACAAACAAAAACGGCTACATTTACAAAGCCAATACCCTCAATGCCAAGTTGCAAGAATAACGGAACATGATCGTGCA GATTTAGATACAGATAATGTGGTTCTAGTGATTTATGATTTACCATATGACCCCTATCAAGTTCGAAATTGGATTGTTAA TGTAAATCCTGAATACTTATATCTTCTTTACAATTCACAGGATAAAGCAAGTAATAACAAAATGTGGTATGCGACAATTC CAAGTGAAAATAATCTGCAAATAGCTTATCAGTTGTTAAAAGAACAGTACAAACAAACTGAAACTGATTTTATATCCAAA AAAGAGTTACAGAATAAACTTGAAGATAAAATTTCTTATCCTGTTACAAATCGATTGATCAACAAAATTATGGATATTTT TAAGGAATTAAAGATTATTGAATACACCGATTCTTACCATGATTATGTTCCAATAAATACAAAACTGATCAACTATCAAG AGGATATTACTACAGAACTTGAGAGCTCACTAATTTACGGTGAAGAGCATAATAGACTTACTAATTTGATTTTCTGGGAA GAATGCTTTTTAAAAGGAAGTTATTCCAAATTATACATGTTATTATATAATCATAATATTTCGCCCGAGTATATTAAAGA GTTAGGTACTTACTAA
Upstream 100 bases:
>100_bases AAAATAAACAGACAGCGTAAAATCTCTACTTTGCACCTTTGAGTTTGTAATCTAAAGATTAACAGCTAAACAGTTTAATT ATGAGTGTGGGGGATTTATT
Downstream 100 bases:
>100_bases TATAAAGGTGGGGAGATGAAAACATTGTTAGATGCCGAACAGTTGTTTTTCAGTTTAAAAGAAAAAATAAAATCATACTA CCCTCTTGACACAGATTTAG
Product: single-stranded-DNA-specific exonuclease RecJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 831; Mature: 831
Protein sequence:
>831_residues MDGQAVKWNIKTDYSETAKELANSCNISTVLAQLLVNRGVTTPEQVADFLNPSFDSLHSPWLLPDMKQAVELIDKIIKSN EPILIYGDYDADGVTATALLYEYLSTKFDNIYYYIPDRFKDGYGLTNAGVNSVLERFPQCKLIITVDCGINSIQEIEELN RLGKKVIVTDHHEQLGDLPSAHAVINPKIHTTNYPFKYLAGVGVAFKLVSALAEQIETHYDFNELLKQYLDLVTIGTIAD LVPLTSENRIFVSKGLQYIDERRPGMKALMDLLGLEYGEVKAGQVGFVIGPRINAAGRLASADEAVQLLTESSESAAREL AKKLDKENRERQKVEQKITKEADEMINRNNLLARGPVLVVWSENWHEGVVGIVASRLLEKYYRPVIVLTRDDEPGKLKGS CRSISGFNMAEALKSCDNLLIKYGGHELAAGLKLESAHLDEFIKQMNHLAQKWLSEDDLLPSIDIDMEIPEEALTRELAE EISQLEPFGMGNPQPVIGCGHIQVASTREVGKSSEHLQIKFKNNMGVLDGIWFKGAEKAKEKNIKTGMPVQAAFIPKIST FKSKSSKGHLSLQLCDMQLPDNQANILRDCRNYSKGKTIKNLLNEKYSTVILVNNKQKRLHLQSQYPQCQVARITEHDRA DLDTDNVVLVIYDLPYDPYQVRNWIVNVNPEYLYLLYNSQDKASNNKMWYATIPSENNLQIAYQLLKEQYKQTETDFISK KELQNKLEDKISYPVTNRLINKIMDIFKELKIIEYTDSYHDYVPINTKLINYQEDITTELESSLIYGEEHNRLTNLIFWE ECFLKGSYSKLYMLLYNHNISPEYIKELGTY
Sequences:
>Translated_831_residues MDGQAVKWNIKTDYSETAKELANSCNISTVLAQLLVNRGVTTPEQVADFLNPSFDSLHSPWLLPDMKQAVELIDKIIKSN EPILIYGDYDADGVTATALLYEYLSTKFDNIYYYIPDRFKDGYGLTNAGVNSVLERFPQCKLIITVDCGINSIQEIEELN RLGKKVIVTDHHEQLGDLPSAHAVINPKIHTTNYPFKYLAGVGVAFKLVSALAEQIETHYDFNELLKQYLDLVTIGTIAD LVPLTSENRIFVSKGLQYIDERRPGMKALMDLLGLEYGEVKAGQVGFVIGPRINAAGRLASADEAVQLLTESSESAAREL AKKLDKENRERQKVEQKITKEADEMINRNNLLARGPVLVVWSENWHEGVVGIVASRLLEKYYRPVIVLTRDDEPGKLKGS CRSISGFNMAEALKSCDNLLIKYGGHELAAGLKLESAHLDEFIKQMNHLAQKWLSEDDLLPSIDIDMEIPEEALTRELAE EISQLEPFGMGNPQPVIGCGHIQVASTREVGKSSEHLQIKFKNNMGVLDGIWFKGAEKAKEKNIKTGMPVQAAFIPKIST FKSKSSKGHLSLQLCDMQLPDNQANILRDCRNYSKGKTIKNLLNEKYSTVILVNNKQKRLHLQSQYPQCQVARITEHDRA DLDTDNVVLVIYDLPYDPYQVRNWIVNVNPEYLYLLYNSQDKASNNKMWYATIPSENNLQIAYQLLKEQYKQTETDFISK KELQNKLEDKISYPVTNRLINKIMDIFKELKIIEYTDSYHDYVPINTKLINYQEDITTELESSLIYGEEHNRLTNLIFWE ECFLKGSYSKLYMLLYNHNISPEYIKELGTY >Mature_831_residues MDGQAVKWNIKTDYSETAKELANSCNISTVLAQLLVNRGVTTPEQVADFLNPSFDSLHSPWLLPDMKQAVELIDKIIKSN EPILIYGDYDADGVTATALLYEYLSTKFDNIYYYIPDRFKDGYGLTNAGVNSVLERFPQCKLIITVDCGINSIQEIEELN RLGKKVIVTDHHEQLGDLPSAHAVINPKIHTTNYPFKYLAGVGVAFKLVSALAEQIETHYDFNELLKQYLDLVTIGTIAD LVPLTSENRIFVSKGLQYIDERRPGMKALMDLLGLEYGEVKAGQVGFVIGPRINAAGRLASADEAVQLLTESSESAAREL AKKLDKENRERQKVEQKITKEADEMINRNNLLARGPVLVVWSENWHEGVVGIVASRLLEKYYRPVIVLTRDDEPGKLKGS CRSISGFNMAEALKSCDNLLIKYGGHELAAGLKLESAHLDEFIKQMNHLAQKWLSEDDLLPSIDIDMEIPEEALTRELAE EISQLEPFGMGNPQPVIGCGHIQVASTREVGKSSEHLQIKFKNNMGVLDGIWFKGAEKAKEKNIKTGMPVQAAFIPKIST FKSKSSKGHLSLQLCDMQLPDNQANILRDCRNYSKGKTIKNLLNEKYSTVILVNNKQKRLHLQSQYPQCQVARITEHDRA DLDTDNVVLVIYDLPYDPYQVRNWIVNVNPEYLYLLYNSQDKASNNKMWYATIPSENNLQIAYQLLKEQYKQTETDFISK KELQNKLEDKISYPVTNRLINKIMDIFKELKIIEYTDSYHDYVPINTKLINYQEDITTELESSLIYGEEHNRLTNLIFWE ECFLKGSYSKLYMLLYNHNISPEYIKELGTY
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=527, Percent_Identity=36.6223908918406, Blast_Score=302, Evalue=7e-83,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 94530; Mature: 94530
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGQAVKWNIKTDYSETAKELANSCNISTVLAQLLVNRGVTTPEQVADFLNPSFDSLHSP CCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHCCCC WLLPDMKQAVELIDKIIKSNEPILIYGDYDADGVTATALLYEYLSTKFDNIYYYIPDRFK CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC DGYGLTNAGVNSVLERFPQCKLIITVDCGINSIQEIEELNRLGKKVIVTDHHEQLGDLPS CCCCCCCCCHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCHHHHCCCCC AHAVINPKIHTTNYPFKYLAGVGVAFKLVSALAEQIETHYDFNELLKQYLDLVTIGTIAD CCEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LVPLTSENRIFVSKGLQYIDERRPGMKALMDLLGLEYGEVKAGQVGFVIGPRINAAGRLA HHCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCC SADEAVQLLTESSESAARELAKKLDKENRERQKVEQKITKEADEMINRNNLLARGPVLVV CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEE WSENWHEGVVGIVASRLLEKYYRPVIVLTRDDEPGKLKGSCRSISGFNMAEALKSCDNLL ECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHE IKYGGHELAAGLKLESAHLDEFIKQMNHLAQKWLSEDDLLPSIDIDMEIPEEALTRELAE ECCCCCHHHCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH EISQLEPFGMGNPQPVIGCGHIQVASTREVGKSSEHLQIKFKNNMGVLDGIWFKGAEKAK HHHHCCCCCCCCCCCEEEECCEEEECCHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHH EKNIKTGMPVQAAFIPKISTFKSKSSKGHLSLQLCDMQLPDNQANILRDCRNYSKGKTIK HCCCCCCCCEEEECCCCHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCHHHH NLLNEKYSTVILVNNKQKRLHLQSQYPQCQVARITEHDRADLDTDNVVLVIYDLPYDPYQ HHHCCCCCEEEEEECCHHHEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCHHH VRNWIVNVNPEYLYLLYNSQDKASNNKMWYATIPSENNLQIAYQLLKEQYKQTETDFISK HCEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH KELQNKLEDKISYPVTNRLINKIMDIFKELKIIEYTDSYHDYVPINTKLINYQEDITTEL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEEECCCCCEECCCEEEECCHHHHHHHH ESSLIYGEEHNRLTNLIFWEECFLKGSYSKLYMLLYNHNISPEYIKELGTY HHHEECCCCCCHHHHHHHHHHHHHCCCHHHEEEEEEECCCCHHHHHHHCCC >Mature Secondary Structure MDGQAVKWNIKTDYSETAKELANSCNISTVLAQLLVNRGVTTPEQVADFLNPSFDSLHSP CCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHCCCC WLLPDMKQAVELIDKIIKSNEPILIYGDYDADGVTATALLYEYLSTKFDNIYYYIPDRFK CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC DGYGLTNAGVNSVLERFPQCKLIITVDCGINSIQEIEELNRLGKKVIVTDHHEQLGDLPS CCCCCCCCCHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCHHHHCCCCC AHAVINPKIHTTNYPFKYLAGVGVAFKLVSALAEQIETHYDFNELLKQYLDLVTIGTIAD CCEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LVPLTSENRIFVSKGLQYIDERRPGMKALMDLLGLEYGEVKAGQVGFVIGPRINAAGRLA HHCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCC SADEAVQLLTESSESAARELAKKLDKENRERQKVEQKITKEADEMINRNNLLARGPVLVV CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEE WSENWHEGVVGIVASRLLEKYYRPVIVLTRDDEPGKLKGSCRSISGFNMAEALKSCDNLL ECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHE IKYGGHELAAGLKLESAHLDEFIKQMNHLAQKWLSEDDLLPSIDIDMEIPEEALTRELAE ECCCCCHHHCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH EISQLEPFGMGNPQPVIGCGHIQVASTREVGKSSEHLQIKFKNNMGVLDGIWFKGAEKAK HHHHCCCCCCCCCCCEEEECCEEEECCHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHH EKNIKTGMPVQAAFIPKISTFKSKSSKGHLSLQLCDMQLPDNQANILRDCRNYSKGKTIK HCCCCCCCCEEEECCCCHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCHHHH NLLNEKYSTVILVNNKQKRLHLQSQYPQCQVARITEHDRADLDTDNVVLVIYDLPYDPYQ HHHCCCCCEEEEEECCHHHEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCHHH VRNWIVNVNPEYLYLLYNSQDKASNNKMWYATIPSENNLQIAYQLLKEQYKQTETDFISK HCEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH KELQNKLEDKISYPVTNRLINKIMDIFKELKIIEYTDSYHDYVPINTKLINYQEDITTEL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEEECCCCCEECCCEEEECCHHHHHHHH ESSLIYGEEHNRLTNLIFWEECFLKGSYSKLYMLLYNHNISPEYIKELGTY HHHEECCCCCCHHHHHHHHHHHHHCCCHHHEEEEEEECCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]