| Definition | Natranaerobius thermophilus JW/NM-WN-LF, complete genome. |
|---|---|
| Accession | NC_010718 |
| Length | 3,165,557 |
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The map label for this gene is 188585854
Identifier: 188585854
GI number: 188585854
Start: 1301823
End: 1303136
Strand: Direct
Name: 188585854
Synonym: Nther_1228
Alternate gene names: NA
Gene position: 1301823-1303136 (Clockwise)
Preceding gene: 188585853
Following gene: 188585855
Centisome position: 41.12
GC content: 32.42
Gene sequence:
>1314_bases TTGACTACTTTACAAGATTACATTGAAGAAAATTATAATGATAGAGAAACTTTCTTTAAAGAAGAAGTTAACAGAATGGA TAATGTGAAAAGGGTTAATGAGATAATTGATATAAAGGAATTTCTTGAAGGTAAGAATCATTCAATATTGAACAGTCAAA CAGAAGAATATAAAGGCAAAACTTATTATCCTGCTACTATAGTTTTGAATTATGCTAAAACAATCTGTAATTTTCAGACT AATTTTCTATTAAAGAATCCAGTTAGTTTAACTTGTAGTAATGAGGGCTTGTTGAATAGGGTGAAAGAGGTTTATGATAT TGGGAATTATGACAGGATAGATTTTGATATACTTGACAAAGTTGTTAAATACGGAAACGCTTATGAATACCCGTATATTT CAGAAGATGGATACATTTACAGTAAAATCATTCCCCCAGAAGATGGCTATCCTATCTTTTCAGAGTTTGGTAATGAATAT ATAGGATTTATTGAAAGTTATACAGTTGATAATGTAACATTCTGGGTTGTTTTTACAGAGGATAAAGTAGAAGAGTATAG CAACAAAGGTGGTAAGATACACAAAATAGGGGAGTATGAAAATGTTTCAGGATTGCCTTGTATCTACAAAAGTGATAATG AATTAGATGAAAACTTTGGCAGATCAGATGTGTTACGGTTTGGTGAAATCATTGAAGAAATGGAAAGATTGATTTCAAGG TCTTGCGATGGTTTATATAAATACATGGATGGGCTGCCTATTATGTCAGGTCAGCAATTAGAGGGAGAAGAAGGGGTTAA TCCTAAAATAGCAGGAGAAGGATTAAACCTTGAAGATGGAGCAGAATTTTACTTTGCCAATAATGAAATAAACGAGAGAG CATTTAAGGAAATTTATAATACACTTAAACAGGCGTTACTGGATATTTCCCAAACTCCTGCAGTTGCCTTTAACCAAACT GATATTTCTAACCTTTCAGAAGTTAGTATTAGAATGATGTACACATTAGCTAGTATGAAAGGTTCACTAAATGAAAAGTT TATGAGAGAAGGGTTTGAACAGAGGTTTGATAGGTTTAAGCGGTTGTTGGATTATAAAGGAGAGAATTATGAAGGGTGGG AGACATTAGACGCTGTGTTTCATCCTGCACTTCCAAGAAATGATAATGAAGTTATTGATAACTTACAGAAGTTAGATGAT ATGGGAGCAATTAGTCTGGATACGTTGTTAGACAAGAATCCATACGTTAACGATAAAAACTTTGAAAAGAAAAGATTAGA AGAAAGCAATGATAATGGGAATAGTGAAGAATAG
Upstream 100 bases:
>100_bases AATCCGCTTAATGAAATTGATGTTTAGAATCAGAAAATAGATATTTATTTTTAACCTGCCTTTTATGGGCAGGTTTTTTA TTTAGAAGGAGGTATTGAAC
Downstream 100 bases:
>100_bases CAAAATAAGAGTTTTTGGTATATGTTAAGAAAACATAACATTACTTCAAATATGCTTTGAATACTGTCATTAAAGGAAAG TTACCAAAAAGATAATAAGT
Product: portal protein SPP1
Products: NA
Alternate protein names: Phage Portal Protein
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MTTLQDYIEENYNDRETFFKEEVNRMDNVKRVNEIIDIKEFLEGKNHSILNSQTEEYKGKTYYPATIVLNYAKTICNFQT NFLLKNPVSLTCSNEGLLNRVKEVYDIGNYDRIDFDILDKVVKYGNAYEYPYISEDGYIYSKIIPPEDGYPIFSEFGNEY IGFIESYTVDNVTFWVVFTEDKVEEYSNKGGKIHKIGEYENVSGLPCIYKSDNELDENFGRSDVLRFGEIIEEMERLISR SCDGLYKYMDGLPIMSGQQLEGEEGVNPKIAGEGLNLEDGAEFYFANNEINERAFKEIYNTLKQALLDISQTPAVAFNQT DISNLSEVSIRMMYTLASMKGSLNEKFMREGFEQRFDRFKRLLDYKGENYEGWETLDAVFHPALPRNDNEVIDNLQKLDD MGAISLDTLLDKNPYVNDKNFEKKRLEESNDNGNSEE
Sequences:
>Translated_437_residues MTTLQDYIEENYNDRETFFKEEVNRMDNVKRVNEIIDIKEFLEGKNHSILNSQTEEYKGKTYYPATIVLNYAKTICNFQT NFLLKNPVSLTCSNEGLLNRVKEVYDIGNYDRIDFDILDKVVKYGNAYEYPYISEDGYIYSKIIPPEDGYPIFSEFGNEY IGFIESYTVDNVTFWVVFTEDKVEEYSNKGGKIHKIGEYENVSGLPCIYKSDNELDENFGRSDVLRFGEIIEEMERLISR SCDGLYKYMDGLPIMSGQQLEGEEGVNPKIAGEGLNLEDGAEFYFANNEINERAFKEIYNTLKQALLDISQTPAVAFNQT DISNLSEVSIRMMYTLASMKGSLNEKFMREGFEQRFDRFKRLLDYKGENYEGWETLDAVFHPALPRNDNEVIDNLQKLDD MGAISLDTLLDKNPYVNDKNFEKKRLEESNDNGNSEE >Mature_436_residues TTLQDYIEENYNDRETFFKEEVNRMDNVKRVNEIIDIKEFLEGKNHSILNSQTEEYKGKTYYPATIVLNYAKTICNFQTN FLLKNPVSLTCSNEGLLNRVKEVYDIGNYDRIDFDILDKVVKYGNAYEYPYISEDGYIYSKIIPPEDGYPIFSEFGNEYI GFIESYTVDNVTFWVVFTEDKVEEYSNKGGKIHKIGEYENVSGLPCIYKSDNELDENFGRSDVLRFGEIIEEMERLISRS CDGLYKYMDGLPIMSGQQLEGEEGVNPKIAGEGLNLEDGAEFYFANNEINERAFKEIYNTLKQALLDISQTPAVAFNQTD ISNLSEVSIRMMYTLASMKGSLNEKFMREGFEQRFDRFKRLLDYKGENYEGWETLDAVFHPALPRNDNEVIDNLQKLDDM GAISLDTLLDKNPYVNDKNFEKKRLEESNDNGNSEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50679; Mature: 50548
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLQDYIEENYNDRETFFKEEVNRMDNVKRVNEIIDIKEFLEGKNHSILNSQTEEYKGK CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC TYYPATIVLNYAKTICNFQTNFLLKNPVSLTCSNEGLLNRVKEVYDIGNYDRIDFDILDK EECCHHHHHHHHHHHHCCHHCEEECCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHH VVKYGNAYEYPYISEDGYIYSKIIPPEDGYPIFSEFGNEYIGFIESYTVDNVTFWVVFTE HHHCCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHCCHHHHHHHHEEECCEEEEEEEEH DKVEEYSNKGGKIHKIGEYENVSGLPCIYKSDNELDENFGRSDVLRFGEIIEEMERLISR HHHHHHHCCCCCEEECCCCCCCCCCCEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHH SCDGLYKYMDGLPIMSGQQLEGEEGVNPKIAGEGLNLEDGAEFYFANNEINERAFKEIYN HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH TLKQALLDISQTPAVAFNQTDISNLSEVSIRMMYTLASMKGSLNEKFMREGFEQRFDRFK HHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH RLLDYKGENYEGWETLDAVFHPALPRNDNEVIDNLQKLDDMGAISLDTLLDKNPYVNDKN HHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHCCCCCCCCCC FEKKRLEESNDNGNSEE CHHHHHHCCCCCCCCCC >Mature Secondary Structure TTLQDYIEENYNDRETFFKEEVNRMDNVKRVNEIIDIKEFLEGKNHSILNSQTEEYKGK CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC TYYPATIVLNYAKTICNFQTNFLLKNPVSLTCSNEGLLNRVKEVYDIGNYDRIDFDILDK EECCHHHHHHHHHHHHCCHHCEEECCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHH VVKYGNAYEYPYISEDGYIYSKIIPPEDGYPIFSEFGNEYIGFIESYTVDNVTFWVVFTE HHHCCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHCCHHHHHHHHEEECCEEEEEEEEH DKVEEYSNKGGKIHKIGEYENVSGLPCIYKSDNELDENFGRSDVLRFGEIIEEMERLISR HHHHHHHCCCCCEEECCCCCCCCCCCEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHH SCDGLYKYMDGLPIMSGQQLEGEEGVNPKIAGEGLNLEDGAEFYFANNEINERAFKEIYN HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH TLKQALLDISQTPAVAFNQTDISNLSEVSIRMMYTLASMKGSLNEKFMREGFEQRFDRFK HHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH RLLDYKGENYEGWETLDAVFHPALPRNDNEVIDNLQKLDDMGAISLDTLLDKNPYVNDKN HHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHCCCCCCCCCC FEKKRLEESNDNGNSEE CHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA