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The map label for this gene is xerC [H]

Identifier: 188585853

GI number: 188585853

Start: 1300832

End: 1301749

Strand: Direct

Name: xerC [H]

Synonym: Nther_1227

Alternate gene names: 188585853

Gene position: 1300832-1301749 (Clockwise)

Preceding gene: 188585852

Following gene: 188585854

Centisome position: 41.09

GC content: 28.76

Gene sequence:

>918_bases
TTGTTGTTGAAGTTTGCTATCCAAGATTTTATTGAGGACAGGGAGTTTAAGAACCTTACTCAAAAAACAATTTCAGGTTA
CAGTGCTACACTAAAAGAGTTTCAAGAATTTATTTCAGAACAGGAAGTTGTTAATGCAAATGATGTAACTCAATCTCACA
TTAAATCTTATCTACTTCACTGTAAAAAGAATAAAAACAATAATCCAACTTCTATTAATCACAAACTTCATAATCTCAAA
ATTTTCTTTAACTACCTACAAGACATTGAAGTAATAAGTGAAAAGCAAAATCCAGCTAAAAAAATTAACTATGTTAAAGA
GGATATTAAAATTGAGGTTTTTAATGATTATCAGATAAAGCAGATGCTAGACTACTACAGAAGAATAAAGCGAAGGGAGA
AAGGATTTTACGCTTATAGAAATTACACCATTATAGTTTTCCTTTTAGGTACTGGTAGTAGATTAGGTGAATTAATCAAT
TTGCGTTGGGATGATATTGATTTTATTAACAACACTATTGTCTTTTATGGCAAAAAGCGGGAATATTCATCAATTCCAAT
GACGGAAAAATTAAAGAAAGAATTAATGGAATACAAAACTTATTGTGAACAGACTTTTGAAAGTTTATCTGAATATGTGT
TTACTAATAGAAAAAATGAAAAGCTCACTGATAATGCAGTAAAATGTATTTTTAAAAGATTAAAGAAGGTCATGAATTTT
AAAAATGTAAGAGTATCTTGCCATACCTTCAGACACACCTTTGCAGTAAACATGATAAAAAACAACTGTGATATATTCAC
TCTTCAAAAGATGTTAAGACATAAAGATTTATCTATGTGTAGAAGGTATGTAAACTTTGGTACTGCTCTAAAGGAACAGA
ATGATAAGTTTAATCCGCTTAATGAAATTGATGTTTAG

Upstream 100 bases:

>100_bases
AAGACAATTAGCGAATAAAGTAGTCAATCTTTAACCCGATTCAAACTATAAAAACCACTTTCTTTTAGTCCAAATAATGG
ACAAAAGGAGAGTGGTTTTT

Downstream 100 bases:

>100_bases
AATCAGAAAATAGATATTTATTTTTAACCTGCCTTTTATGGGCAGGTTTTTTATTTAGAAGGAGGTATTGAACTTGACTA
CTTTACAAGATTACATTGAA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLLKFAIQDFIEDREFKNLTQKTISGYSATLKEFQEFISEQEVVNANDVTQSHIKSYLLHCKKNKNNNPTSINHKLHNLK
IFFNYLQDIEVISEKQNPAKKINYVKEDIKIEVFNDYQIKQMLDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELIN
LRWDDIDFINNTIVFYGKKREYSSIPMTEKLKKELMEYKTYCEQTFESLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNF
KNVRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNFGTALKEQNDKFNPLNEIDV

Sequences:

>Translated_305_residues
MLLKFAIQDFIEDREFKNLTQKTISGYSATLKEFQEFISEQEVVNANDVTQSHIKSYLLHCKKNKNNNPTSINHKLHNLK
IFFNYLQDIEVISEKQNPAKKINYVKEDIKIEVFNDYQIKQMLDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELIN
LRWDDIDFINNTIVFYGKKREYSSIPMTEKLKKELMEYKTYCEQTFESLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNF
KNVRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNFGTALKEQNDKFNPLNEIDV
>Mature_305_residues
MLLKFAIQDFIEDREFKNLTQKTISGYSATLKEFQEFISEQEVVNANDVTQSHIKSYLLHCKKNKNNNPTSINHKLHNLK
IFFNYLQDIEVISEKQNPAKKINYVKEDIKIEVFNDYQIKQMLDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELIN
LRWDDIDFINNTIVFYGKKREYSSIPMTEKLKKELMEYKTYCEQTFESLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNF
KNVRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNFGTALKEQNDKFNPLNEIDV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36600; Mature: 36600

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKFAIQDFIEDREFKNLTQKTISGYSATLKEFQEFISEQEVVNANDVTQSHIKSYLLH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
CKKNKNNNPTSINHKLHNLKIFFNYLQDIEVISEKQNPAKKINYVKEDIKIEVFNDYQIK
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCHHHH
QMLDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELINLRWDDIDFINNTIVFYGKKR
HHHHHHHHHHHHHCCCEEEECCEEEEEEECCCHHHHHHHHCCCCCHHHHCCEEEEEECCC
EYSSIPMTEKLKKELMEYKTYCEQTFESLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCH
KNVRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNFGTALKEQNDKFNPL
HCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NEIDV
CCCCC
>Mature Secondary Structure
MLLKFAIQDFIEDREFKNLTQKTISGYSATLKEFQEFISEQEVVNANDVTQSHIKSYLLH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
CKKNKNNNPTSINHKLHNLKIFFNYLQDIEVISEKQNPAKKINYVKEDIKIEVFNDYQIK
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCHHHH
QMLDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELINLRWDDIDFINNTIVFYGKKR
HHHHHHHHHHHHHCCCEEEECCEEEEEEECCCHHHHHHHHCCCCCHHHHCCEEEEEECCC
EYSSIPMTEKLKKELMEYKTYCEQTFESLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCH
KNVRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNFGTALKEQNDKFNPL
HCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NEIDV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA