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The map label for this gene is 188585777

Identifier: 188585777

GI number: 188585777

Start: 1217436

End: 1218311

Strand: Reverse

Name: 188585777

Synonym: Nther_1151

Alternate gene names: NA

Gene position: 1218311-1217436 (Counterclockwise)

Preceding gene: 188585778

Following gene: 188585773

Centisome position: 38.49

GC content: 34.7

Gene sequence:

>876_bases
ATGAGATATGAAGGAAATTTGTACAGGCCTCCAAGTGAAGCAAGAAGCCTTATTATTCAAGCTACTATTGGTTGTTCTCA
TAATCAATGTACTTTTTGCAGTATGTACAAAGATAAACAATTTCGTATAAGAAGTCTTGAAGAAATCATGGAAGATCTAG
AAACAGCCAAAAAACAGTTTCCAAAAGTAGAAAGGATATTTTTAGCTGATGGCAATGCTTTAGCATTAAAGACGGAAAAA
TTAAAAGAAATTTTATTAAAAATCAAGGAATTATTTCCCGAATGTCAACGAGTAAGCATTTATAGCGGTCCAAAGGACAT
CTTAAGAAAAAGTCTAGATGAGCTCAAAACTTTGAATGAGTTAGGTCTATCAATAGCATATCTAGGTATAGAGTCTGGCA
GTGATAATATATTAACTAAAATAAACAAAGGGGTTACTGCTCAAGAAATCACAGAAGCCGGTAAAAAAATAATGGCTTCT
GGCATAAAACTCTCAGCCACTATAATTTCTGGCCTAGGAAGCAAAGAAAACTGGGAAGAACACGCTTTAGCTTCAGCAAA
AGTTGCTAGTGAAATTAACCCCGACTATCTAGCTTTACTTACTTTATTAGTCCAACCGGGAACAAAACTATATGAGGATG
TGAATAGCGGAAAATTCCAGCTACTAACACCAAAAGAAGTATTAAAAGAAACTAAAGTCTTTATTGAAAATCTGGATTTA
GACAATTGTGTCTTCAGAAGTAACCATGCCTCTAATTACGTGACACTAGCCGGTACATTATCTCAGGAACAAGACAAACT
ATTAAACACCATTGAAAGCGCCCTTGAAGATGAAGGAGATAACTTCATTAAAGAAGAAGGATTCAGGCGATTGTAA

Upstream 100 bases:

>100_bases
AGTGGCTTGACACGATCAAAAGTATTACTTCGTTTGAAAACATAAAAAATTTTTCTTATAATCAGTTAGTAGATTCAAAA
TAATTTTAGGAGTTGATGCT

Downstream 100 bases:

>100_bases
AATTAAATCTTTTAAATCTTTATGTAGATATAAATGGCCGAAGCCTGATAAACTTGTCAAGCTTCGGCCATTTAATTTAT
TTTACTTCTCGCTACTACTA

Product: Radical SAM domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MRYEGNLYRPPSEARSLIIQATIGCSHNQCTFCSMYKDKQFRIRSLEEIMEDLETAKKQFPKVERIFLADGNALALKTEK
LKEILLKIKELFPECQRVSIYSGPKDILRKSLDELKTLNELGLSIAYLGIESGSDNILTKINKGVTAQEITEAGKKIMAS
GIKLSATIISGLGSKENWEEHALASAKVASEINPDYLALLTLLVQPGTKLYEDVNSGKFQLLTPKEVLKETKVFIENLDL
DNCVFRSNHASNYVTLAGTLSQEQDKLLNTIESALEDEGDNFIKEEGFRRL

Sequences:

>Translated_291_residues
MRYEGNLYRPPSEARSLIIQATIGCSHNQCTFCSMYKDKQFRIRSLEEIMEDLETAKKQFPKVERIFLADGNALALKTEK
LKEILLKIKELFPECQRVSIYSGPKDILRKSLDELKTLNELGLSIAYLGIESGSDNILTKINKGVTAQEITEAGKKIMAS
GIKLSATIISGLGSKENWEEHALASAKVASEINPDYLALLTLLVQPGTKLYEDVNSGKFQLLTPKEVLKETKVFIENLDL
DNCVFRSNHASNYVTLAGTLSQEQDKLLNTIESALEDEGDNFIKEEGFRRL
>Mature_291_residues
MRYEGNLYRPPSEARSLIIQATIGCSHNQCTFCSMYKDKQFRIRSLEEIMEDLETAKKQFPKVERIFLADGNALALKTEK
LKEILLKIKELFPECQRVSIYSGPKDILRKSLDELKTLNELGLSIAYLGIESGSDNILTKINKGVTAQEITEAGKKIMAS
GIKLSATIISGLGSKENWEEHALASAKVASEINPDYLALLTLLVQPGTKLYEDVNSGKFQLLTPKEVLKETKVFIENLDL
DNCVFRSNHASNYVTLAGTLSQEQDKLLNTIESALEDEGDNFIKEEGFRRL

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 32613; Mature: 32613

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYEGNLYRPPSEARSLIIQATIGCSHNQCTFCSMYKDKQFRIRSLEEIMEDLETAKKQF
CCCCCCCCCCCHHHHHEEEEEEECCCCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHC
PKVERIFLADGNALALKTEKLKEILLKIKELFPECQRVSIYSGPKDILRKSLDELKTLNE
CCCEEEEEECCCEEEEEHHHHHHHHHHHHHHCCHHHEEEECCCHHHHHHHHHHHHHHHHH
LGLSIAYLGIESGSDNILTKINKGVTAQEITEAGKKIMASGIKLSATIISGLGSKENWEE
HCCEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
HALASAKVASEINPDYLALLTLLVQPGTKLYEDVNSGKFQLLTPKEVLKETKVFIENLDL
HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCC
DNCVFRSNHASNYVTLAGTLSQEQDKLLNTIESALEDEGDNFIKEEGFRRL
CHHEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
>Mature Secondary Structure
MRYEGNLYRPPSEARSLIIQATIGCSHNQCTFCSMYKDKQFRIRSLEEIMEDLETAKKQF
CCCCCCCCCCCHHHHHEEEEEEECCCCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHC
PKVERIFLADGNALALKTEKLKEILLKIKELFPECQRVSIYSGPKDILRKSLDELKTLNE
CCCEEEEEECCCEEEEEHHHHHHHHHHHHHHCCHHHEEEECCCHHHHHHHHHHHHHHHHH
LGLSIAYLGIESGSDNILTKINKGVTAQEITEAGKKIMASGIKLSATIISGLGSKENWEE
HCCEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
HALASAKVASEINPDYLALLTLLVQPGTKLYEDVNSGKFQLLTPKEVLKETKVFIENLDL
HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCC
DNCVFRSNHASNYVTLAGTLSQEQDKLLNTIESALEDEGDNFIKEEGFRRL
CHHEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]