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The map label for this gene is gerKA [H]

Identifier: 188585504

GI number: 188585504

Start: 923917

End: 925509

Strand: Reverse

Name: gerKA [H]

Synonym: Nther_0876

Alternate gene names: 188585504

Gene position: 925509-923917 (Counterclockwise)

Preceding gene: 188585509

Following gene: 188585503

Centisome position: 29.24

GC content: 37.35

Gene sequence:

>1593_bases
ATGCTATCCCATTTTATAAAGCGATTTCAAATGCTGTTTCAACAGATCAAAGGACAGGAACATGAAACACCTGTTGAAAG
CCAGCAAAAAAATTCAATTCCAATTAAAAAAAGTTATCAAAAGAACTTAGAAGATATAAAAAACGCCCTAGACACTAACT
TCGATCTAGTTATACGAGAGTTTAACGTTCAAGGTCATGAAAACCGGAAAGCATTCATCGCCTATTTAAGTAAAATCGTA
AATGAAGAAAAAATCAATGATAATATAGTCAAACCTCTAATGGAACCTATGGAAAGATATGAATCATTACAAAACTTAGA
TCTATCCTATATCAAAAATTCTATCTTACCAACAGTCAATGTAGAACAGGTTTCAGATCTTAATCAAATCATTGAAAATA
TCGTTAATGGAGAAACTGCCCTATTCTATATGAATTATGGAGAAGCTCTATCCATCGATAGCTGGGAAGTTAAAGGTAGA
GATATAGAAAAACCGGAAACAGAAACGGTAGTTCGAGGACCTAAAGAAAGCTTTAACGAAAGTCTTAGCGAAAATACCGC
TTTATTGCGCCGAAAAATTAAGAATCCTGACCTCAAGCTAGAATCATTTACTCTAGGAAATCAGACCAAAACAGAAGTGA
TAGTCGCGTACATGGAGGATATTGCCGACGAAAACATCGTTAACGAAGTTAAAAGCAGATTATCCGAAATCGATATTGAT
GCCATACTTGAATCTGGATACGTGGAAGAGTTTCTAGAAGATGCTCCCTACTCCCCTTTTCCCACAGTAGGAAACACCGA
AAAACCAGATAAACTAGCTGCTGATTTACTTGATGGTCGAATAGGATTGATGTTTGATGGAACACCTATAGCCCTGTATG
TACCTTATCTATTCGTAGAAACTTTTATGACTTCTGAAGATTATTATACCAGATATTCTTATGCTAGTTTTTTGAGAGGT
ATCCGAATAATCGCTCTATTAGTTACTGTGATGTTACCTGGATTCTATGTCAGCGTAGTCTCTTTTCACCCGGAATTAAT
TCCAAAAGAATTAGCAGTTTCTATAGCGGTTGCGTCTGAGGGAGTCCCTTTCCCCACCTTTTTAGAAATATTGTTCTTCG
GGGTAATATTTGAAATTTTAAGAGAAGCTGGGATACGAATGCCAAGTAATGTAGGGCAAGCTGTCAGTATTGTAGGTGCT
TTAATTTTAGGTGAGGCAGCGATTCAGGCCGGTATAGTAGGAGCACCGGTGGTGATAGTCACAGCCTTAACAGCAATATC
GGGTTTTGCCGTTCCTACCCAACTAGACGCACTGACTATGCTTAGAATTCCTTTTGTTTTTGCTAGCGCCATCATGGGAT
TACCGGGGCTATTAACAGCATTTAACTTTATTATCATTTATTTATGTTCACTCAGATCTTTTAGTGTTCCATACTTCTCT
CCCGTAGCACCCCTGTCATTGAGTGGTCTAAAAGATTTTATGGTACGTGTTCCTTGGTGGCTAATGTTTAAACGTCCCAA
ATTAATCTCAGAAAAAAACAAAAAACGTCAGCCTTTTGGTCAGCGACCTAAACCCGAACAAAATAATGATTAA

Upstream 100 bases:

>100_bases
ATTAAAAAACCGTTTATAGTCTATACTATTGCAGGACAAACTAATCAAACGAAGGTACTAAATTAAAACACAAATAGCAA
AGTGAAAGTGGTGTAATTTT

Downstream 100 bases:

>100_bases
TAATGATTAGTAAATCAAAAAACAATAAATCAATAAATCGATAAGGAGTTTTGTAAATTGTTAAATATAAAGACAAAACT
GTTTCCATCAATAATAATCA

Product: GerA spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MLSHFIKRFQMLFQQIKGQEHETPVESQQKNSIPIKKSYQKNLEDIKNALDTNFDLVIREFNVQGHENRKAFIAYLSKIV
NEEKINDNIVKPLMEPMERYESLQNLDLSYIKNSILPTVNVEQVSDLNQIIENIVNGETALFYMNYGEALSIDSWEVKGR
DIEKPETETVVRGPKESFNESLSENTALLRRKIKNPDLKLESFTLGNQTKTEVIVAYMEDIADENIVNEVKSRLSEIDID
AILESGYVEEFLEDAPYSPFPTVGNTEKPDKLAADLLDGRIGLMFDGTPIALYVPYLFVETFMTSEDYYTRYSYASFLRG
IRIIALLVTVMLPGFYVSVVSFHPELIPKELAVSIAVASEGVPFPTFLEILFFGVIFEILREAGIRMPSNVGQAVSIVGA
LILGEAAIQAGIVGAPVVIVTALTAISGFAVPTQLDALTMLRIPFVFASAIMGLPGLLTAFNFIIIYLCSLRSFSVPYFS
PVAPLSLSGLKDFMVRVPWWLMFKRPKLISEKNKKRQPFGQRPKPEQNND

Sequences:

>Translated_530_residues
MLSHFIKRFQMLFQQIKGQEHETPVESQQKNSIPIKKSYQKNLEDIKNALDTNFDLVIREFNVQGHENRKAFIAYLSKIV
NEEKINDNIVKPLMEPMERYESLQNLDLSYIKNSILPTVNVEQVSDLNQIIENIVNGETALFYMNYGEALSIDSWEVKGR
DIEKPETETVVRGPKESFNESLSENTALLRRKIKNPDLKLESFTLGNQTKTEVIVAYMEDIADENIVNEVKSRLSEIDID
AILESGYVEEFLEDAPYSPFPTVGNTEKPDKLAADLLDGRIGLMFDGTPIALYVPYLFVETFMTSEDYYTRYSYASFLRG
IRIIALLVTVMLPGFYVSVVSFHPELIPKELAVSIAVASEGVPFPTFLEILFFGVIFEILREAGIRMPSNVGQAVSIVGA
LILGEAAIQAGIVGAPVVIVTALTAISGFAVPTQLDALTMLRIPFVFASAIMGLPGLLTAFNFIIIYLCSLRSFSVPYFS
PVAPLSLSGLKDFMVRVPWWLMFKRPKLISEKNKKRQPFGQRPKPEQNND
>Mature_530_residues
MLSHFIKRFQMLFQQIKGQEHETPVESQQKNSIPIKKSYQKNLEDIKNALDTNFDLVIREFNVQGHENRKAFIAYLSKIV
NEEKINDNIVKPLMEPMERYESLQNLDLSYIKNSILPTVNVEQVSDLNQIIENIVNGETALFYMNYGEALSIDSWEVKGR
DIEKPETETVVRGPKESFNESLSENTALLRRKIKNPDLKLESFTLGNQTKTEVIVAYMEDIADENIVNEVKSRLSEIDID
AILESGYVEEFLEDAPYSPFPTVGNTEKPDKLAADLLDGRIGLMFDGTPIALYVPYLFVETFMTSEDYYTRYSYASFLRG
IRIIALLVTVMLPGFYVSVVSFHPELIPKELAVSIAVASEGVPFPTFLEILFFGVIFEILREAGIRMPSNVGQAVSIVGA
LILGEAAIQAGIVGAPVVIVTALTAISGFAVPTQLDALTMLRIPFVFASAIMGLPGLLTAFNFIIIYLCSLRSFSVPYFS
PVAPLSLSGLKDFMVRVPWWLMFKRPKLISEKNKKRQPFGQRPKPEQNND

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 59686; Mature: 59686

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSHFIKRFQMLFQQIKGQEHETPVESQQKNSIPIKKSYQKNLEDIKNALDTNFDLVIRE
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
FNVQGHENRKAFIAYLSKIVNEEKINDNIVKPLMEPMERYESLQNLDLSYIKNSILPTVN
ECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
VEQVSDLNQIIENIVNGETALFYMNYGEALSIDSWEVKGRDIEKPETETVVRGPKESFNE
HHHHHHHHHHHHHHHCCCEEEEEEECCCEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHH
SLSENTALLRRKIKNPDLKLESFTLGNQTKTEVIVAYMEDIADENIVNEVKSRLSEIDID
HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHH
AILESGYVEEFLEDAPYSPFPTVGNTEKPDKLAADLLDGRIGLMFDGTPIALYVPYLFVE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
TFMTSEDYYTRYSYASFLRGIRIIALLVTVMLPGFYVSVVSFHPELIPKELAVSIAVASE
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHEECCC
GVPFPTFLEILFFGVIFEILREAGIRMPSNVGQAVSIVGALILGEAAIQAGIVGAPVVIV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TALTAISGFAVPTQLDALTMLRIPFVFASAIMGLPGLLTAFNFIIIYLCSLRSFSVPYFS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PVAPLSLSGLKDFMVRVPWWLMFKRPKLISEKNKKRQPFGQRPKPEQNND
CCCCCHHHHHHHHHHHCCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSHFIKRFQMLFQQIKGQEHETPVESQQKNSIPIKKSYQKNLEDIKNALDTNFDLVIRE
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
FNVQGHENRKAFIAYLSKIVNEEKINDNIVKPLMEPMERYESLQNLDLSYIKNSILPTVN
ECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
VEQVSDLNQIIENIVNGETALFYMNYGEALSIDSWEVKGRDIEKPETETVVRGPKESFNE
HHHHHHHHHHHHHHHCCCEEEEEEECCCEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHH
SLSENTALLRRKIKNPDLKLESFTLGNQTKTEVIVAYMEDIADENIVNEVKSRLSEIDID
HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHH
AILESGYVEEFLEDAPYSPFPTVGNTEKPDKLAADLLDGRIGLMFDGTPIALYVPYLFVE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
TFMTSEDYYTRYSYASFLRGIRIIALLVTVMLPGFYVSVVSFHPELIPKELAVSIAVASE
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHEECCC
GVPFPTFLEILFFGVIFEILREAGIRMPSNVGQAVSIVGALILGEAAIQAGIVGAPVVIV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TALTAISGFAVPTQLDALTMLRIPFVFASAIMGLPGLLTAFNFIIIYLCSLRSFSVPYFS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PVAPLSLSGLKDFMVRVPWWLMFKRPKLISEKNKKRQPFGQRPKPEQNND
CCCCCHHHHHHHHHHHCCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]