Click here to switch to the map view.

The map label for this gene is stc [H]

Identifier: 188585407

GI number: 188585407

Start: 809056

End: 811080

Strand: Direct

Name: stc [H]

Synonym: Nther_0777

Alternate gene names: 188585407

Gene position: 809056-811080 (Clockwise)

Preceding gene: 188585406

Following gene: 188585408

Centisome position: 25.56

GC content: 31.7

Gene sequence:

>2025_bases
ATGAAAAAGAAGAAAATGATTTTCTTTTCATTAGATCCTGCATCTAAAGAAAAATATACCAAGGATTTACAAAGTTTTTT
TGGAGACTATATAGAAATTGAATCGTATTCCCTAAAAGAGGGGATTAATCATAAAATAAATGGCGATTTACTGATGATTT
CTACTCCTTTACTTAATGAGTATGTAAAAAAATTTGTTTCTTCTGATATAGAAGTAATTTATCCAACCAGGACAATATTA
AAAAAGGGATTTAAAGAACTAAAAAAGTTAGAAAAAGGACAACGAGCCATGCTTGTTAGTAATAGTAGTACCTTTGCTTT
AGATCTATTGTCATTATTGCATCGAATAGGAATTGATCATATACAATTTGATATATTCTATCCAGATATGGGACAAGTGC
CCGATTTGGATTTAGCGGTTACCCCAGGTCAAACTTTCTATGTACCATCAAAAGTGAATCAGGTAATTGATATTGGGTGG
CGCGAATTTGATATATCAACATTATGGGAAATTGCCCTTAAGCTCAAAATTAATGATGAAACAATATTTGATAGTGTCAA
AGCTCACAGCAAAAAAATCGTTCCTGTAAGTTATGGAATGCACTCGATATTGGATGATATCACCAAATCAGAGGCCAAAT
TATCTATTATTTTAGATGAGGTGGACGATGCTATCCTCATGACTAATAACAGAGGTAGTATTCTTCATAACAATTCTGCA
TTAGTTAACATGTTAAACATTAATAAAACAGATTTGCAAGGTACCAATGTTGATGATGAAACTATTCTAGCTGAAATTCA
ACAAAAATTAATTAATAAAAACAATGTGAATAACCAGGTCATAGATATTGACCTTTTAGATTCTTCTTTACTCGTTACCA
AAAAACCCTTAATGGACCACAATAAACCATTTGGTTATGTTTATATTATGAAAAATGTAAACAATATCCGAAGACTAGAA
AATAAAGTAAGAAAAACTTTAGCTGAAAAAGGCCATTTAGCAAGATATACTTTTGATTCCATTGTTGGAAAAAGCACTGA
ACTAATTAAATGTAAACAAAAAGGTATGAAGATAGCAAGGTTAGACAAACCTGTACTGATTATAGGTCAAACTGGTACTG
GAAAAGAGTTGTTTGCACAATCAATTCACAACTACTCTGCAAGAAAGGATAATCCTTTTGTTGCTGTGAACTGTGCAGCA
TTACATTCCGAACTATTAGAAAGTGAATTGTTTGGTTATGAAGAGGGTGCTTTTACAGGTGCCAAAAAAGGTGGAAAAGA
AGGATTGTTTGAACTTGCCCATGGAGGAACTCTTTTTTTAGATGAAATAGGTGACATCTCTTCAGAGCTGCAAGCTAAAC
TTCTTCGAGTATTACAGGAAAAGGAAATAATGAGAATTGGTGGAACTAAGACATTTCCTGTTGATGTTAGAATTATTGCA
GCTACCAATAAGGATTTTAAGAAACTTATGAGACAAGGCAAGCTAAGAAAAGATTTATATTATAGATTGAGTGTTCTAAA
TCTAAAACTTCCCTCTTTAAATGATTTACAAGAAGATATTCCGCTACTAGTAGAATTTTTTTTACAAAAAACCGGAGTTC
GAAAAAGTATGGAAAAAGAAGTCATGGATAAATTAGTTAATCATGATTGGGACGGCAATATAAGGGAATTGGAAAACTGT
GTTGAATATCTTGCCTATATGTCTGATGATTCCATTAAGTTAGAAGATCTTCCGGATGATTTCTATGAAGACACTGCTGA
TTATGAAACTACTAATGAAATTGACCATTTTCCGGAACTTCTTCAAGAAGAAAAAATGATTTCAGATTCAATACTCAAAA
TAATTAAAATCAGAAGTGCAGGTCGAAGGACTATAAAAGAACTATTAGAAAATCAAGGGATTAAAACTTCAGAACATGAA
ATACGTAAAATATTAAATTATCTACAACACAAAGGTTTTATTACCTACGGAAAAGGTCGAAAGGGGGTAGAGTTAACTCA
TTCTGGGAAAAAACTAAATCATTAA

Upstream 100 bases:

>100_bases
ACCATGATGACCCCCGATGTGGTAAGATATACTGTATACATGTATTAATATAAGCTAAATAGATTAAAAACTATACACTG
TCAGAAAGGATTGTTTAGTT

Downstream 100 bases:

>100_bases
TGTATGTCTAAATTAAATGTTAACTAACTTGTTTAATTTAATTAATTGATAATAGTGGGTGTTTATTGGGCGCTGATTAT
CCCGGTAAGCATCCACTTTT

Product: putative sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 674; Mature: 674

Protein sequence:

>674_residues
MKKKKMIFFSLDPASKEKYTKDLQSFFGDYIEIESYSLKEGINHKINGDLLMISTPLLNEYVKKFVSSDIEVIYPTRTIL
KKGFKELKKLEKGQRAMLVSNSSTFALDLLSLLHRIGIDHIQFDIFYPDMGQVPDLDLAVTPGQTFYVPSKVNQVIDIGW
REFDISTLWEIALKLKINDETIFDSVKAHSKKIVPVSYGMHSILDDITKSEAKLSIILDEVDDAILMTNNRGSILHNNSA
LVNMLNINKTDLQGTNVDDETILAEIQQKLINKNNVNNQVIDIDLLDSSLLVTKKPLMDHNKPFGYVYIMKNVNNIRRLE
NKVRKTLAEKGHLARYTFDSIVGKSTELIKCKQKGMKIARLDKPVLIIGQTGTGKELFAQSIHNYSARKDNPFVAVNCAA
LHSELLESELFGYEEGAFTGAKKGGKEGLFELAHGGTLFLDEIGDISSELQAKLLRVLQEKEIMRIGGTKTFPVDVRIIA
ATNKDFKKLMRQGKLRKDLYYRLSVLNLKLPSLNDLQEDIPLLVEFFLQKTGVRKSMEKEVMDKLVNHDWDGNIRELENC
VEYLAYMSDDSIKLEDLPDDFYEDTADYETTNEIDHFPELLQEEKMISDSILKIIKIRSAGRRTIKELLENQGIKTSEHE
IRKILNYLQHKGFITYGKGRKGVELTHSGKKLNH

Sequences:

>Translated_674_residues
MKKKKMIFFSLDPASKEKYTKDLQSFFGDYIEIESYSLKEGINHKINGDLLMISTPLLNEYVKKFVSSDIEVIYPTRTIL
KKGFKELKKLEKGQRAMLVSNSSTFALDLLSLLHRIGIDHIQFDIFYPDMGQVPDLDLAVTPGQTFYVPSKVNQVIDIGW
REFDISTLWEIALKLKINDETIFDSVKAHSKKIVPVSYGMHSILDDITKSEAKLSIILDEVDDAILMTNNRGSILHNNSA
LVNMLNINKTDLQGTNVDDETILAEIQQKLINKNNVNNQVIDIDLLDSSLLVTKKPLMDHNKPFGYVYIMKNVNNIRRLE
NKVRKTLAEKGHLARYTFDSIVGKSTELIKCKQKGMKIARLDKPVLIIGQTGTGKELFAQSIHNYSARKDNPFVAVNCAA
LHSELLESELFGYEEGAFTGAKKGGKEGLFELAHGGTLFLDEIGDISSELQAKLLRVLQEKEIMRIGGTKTFPVDVRIIA
ATNKDFKKLMRQGKLRKDLYYRLSVLNLKLPSLNDLQEDIPLLVEFFLQKTGVRKSMEKEVMDKLVNHDWDGNIRELENC
VEYLAYMSDDSIKLEDLPDDFYEDTADYETTNEIDHFPELLQEEKMISDSILKIIKIRSAGRRTIKELLENQGIKTSEHE
IRKILNYLQHKGFITYGKGRKGVELTHSGKKLNH
>Mature_674_residues
MKKKKMIFFSLDPASKEKYTKDLQSFFGDYIEIESYSLKEGINHKINGDLLMISTPLLNEYVKKFVSSDIEVIYPTRTIL
KKGFKELKKLEKGQRAMLVSNSSTFALDLLSLLHRIGIDHIQFDIFYPDMGQVPDLDLAVTPGQTFYVPSKVNQVIDIGW
REFDISTLWEIALKLKINDETIFDSVKAHSKKIVPVSYGMHSILDDITKSEAKLSIILDEVDDAILMTNNRGSILHNNSA
LVNMLNINKTDLQGTNVDDETILAEIQQKLINKNNVNNQVIDIDLLDSSLLVTKKPLMDHNKPFGYVYIMKNVNNIRRLE
NKVRKTLAEKGHLARYTFDSIVGKSTELIKCKQKGMKIARLDKPVLIIGQTGTGKELFAQSIHNYSARKDNPFVAVNCAA
LHSELLESELFGYEEGAFTGAKKGGKEGLFELAHGGTLFLDEIGDISSELQAKLLRVLQEKEIMRIGGTKTFPVDVRIIA
ATNKDFKKLMRQGKLRKDLYYRLSVLNLKLPSLNDLQEDIPLLVEFFLQKTGVRKSMEKEVMDKLVNHDWDGNIRELENC
VEYLAYMSDDSIKLEDLPDDFYEDTADYETTNEIDHFPELLQEEKMISDSILKIIKIRSAGRRTIKELLENQGIKTSEHE
IRKILNYLQHKGFITYGKGRKGVELTHSGKKLNH

Specific function: Involved In The Transcriptional Regulation Of The Propionate Catabolism Operon. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1786524, Length=263, Percent_Identity=47.9087452471483, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI87082117, Length=210, Percent_Identity=53.8095238095238, Blast_Score=234, Evalue=1e-62,
Organism=Escherichia coli, GI1788905, Length=258, Percent_Identity=44.1860465116279, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI1790437, Length=244, Percent_Identity=49.1803278688525, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI1788550, Length=303, Percent_Identity=43.5643564356436, Blast_Score=225, Evalue=8e-60,
Organism=Escherichia coli, GI1789233, Length=232, Percent_Identity=46.9827586206897, Blast_Score=225, Evalue=9e-60,
Organism=Escherichia coli, GI1789087, Length=247, Percent_Identity=46.9635627530364, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI1790299, Length=254, Percent_Identity=43.3070866141732, Blast_Score=209, Evalue=6e-55,
Organism=Escherichia coli, GI87081872, Length=319, Percent_Identity=37.9310344827586, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI87082152, Length=245, Percent_Identity=43.265306122449, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI1787583, Length=252, Percent_Identity=40.4761904761905, Blast_Score=184, Evalue=2e-47,
Organism=Escherichia coli, GI87081858, Length=400, Percent_Identity=27.75, Blast_Score=165, Evalue=1e-41,
Organism=Escherichia coli, GI1789828, Length=235, Percent_Identity=37.4468085106383, Blast_Score=135, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 76848; Mature: 76848

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKKMIFFSLDPASKEKYTKDLQSFFGDYIEIESYSLKEGINHKINGDLLMISTPLLNE
CCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCEEEEECHHHHH
YVKKFVSSDIEVIYPTRTILKKGFKELKKLEKGQRAMLVSNSSTFALDLLSLLHRIGIDH
HHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCE
IQFDIFYPDMGQVPDLDLAVTPGQTFYVPSKVNQVIDIGWREFDISTLWEIALKLKINDE
EEEEEECCCCCCCCCCCEEECCCCEEECHHHHHHHHHCCCCEECHHHHEEEEEEEEECCH
TIFDSVKAHSKKIVPVSYGMHSILDDITKSEAKLSIILDEVDDAILMTNNRGSILHNNSA
HHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCEEECCCE
LVNMLNINKTDLQGTNVDDETILAEIQQKLINKNNVNNQVIDIDLLDSSLLVTKKPLMDH
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCCC
NKPFGYVYIMKNVNNIRRLENKVRKTLAEKGHLARYTFDSIVGKSTELIKCKQKGMKIAR
CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCHHHHHHHHHCCEEEE
LDKPVLIIGQTGTGKELFAQSIHNYSARKDNPFVAVNCAALHSELLESELFGYEEGAFTG
CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCC
AKKGGKEGLFELAHGGTLFLDEIGDISSELQAKLLRVLQEKEIMRIGGTKTFPVDVRIIA
CCCCCHHHHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEEEE
ATNKDFKKLMRQGKLRKDLYYRLSVLNLKLPSLNDLQEDIPLLVEFFLQKTGVRKSMEKE
ECCHHHHHHHHHCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
VMDKLVNHDWDGNIRELENCVEYLAYMSDDSIKLEDLPDDFYEDTADYETTNEIDHFPEL
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHH
LQEEKMISDSILKIIKIRSAGRRTIKELLENQGIKTSEHEIRKILNYLQHKGFITYGKGR
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEECCCC
KGVELTHSGKKLNH
CCCEEEECCCCCCC
>Mature Secondary Structure
MKKKKMIFFSLDPASKEKYTKDLQSFFGDYIEIESYSLKEGINHKINGDLLMISTPLLNE
CCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCEEEEECHHHHH
YVKKFVSSDIEVIYPTRTILKKGFKELKKLEKGQRAMLVSNSSTFALDLLSLLHRIGIDH
HHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCE
IQFDIFYPDMGQVPDLDLAVTPGQTFYVPSKVNQVIDIGWREFDISTLWEIALKLKINDE
EEEEEECCCCCCCCCCCEEECCCCEEECHHHHHHHHHCCCCEECHHHHEEEEEEEEECCH
TIFDSVKAHSKKIVPVSYGMHSILDDITKSEAKLSIILDEVDDAILMTNNRGSILHNNSA
HHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCEEECCCE
LVNMLNINKTDLQGTNVDDETILAEIQQKLINKNNVNNQVIDIDLLDSSLLVTKKPLMDH
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCCC
NKPFGYVYIMKNVNNIRRLENKVRKTLAEKGHLARYTFDSIVGKSTELIKCKQKGMKIAR
CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCHHHHHHHHHCCEEEE
LDKPVLIIGQTGTGKELFAQSIHNYSARKDNPFVAVNCAALHSELLESELFGYEEGAFTG
CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCC
AKKGGKEGLFELAHGGTLFLDEIGDISSELQAKLLRVLQEKEIMRIGGTKTFPVDVRIIA
CCCCCHHHHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEEEE
ATNKDFKKLMRQGKLRKDLYYRLSVLNLKLPSLNDLQEDIPLLVEFFLQKTGVRKSMEKE
ECCHHHHHHHHHCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
VMDKLVNHDWDGNIRELENCVEYLAYMSDDSIKLEDLPDDFYEDTADYETTNEIDHFPEL
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHH
LQEEKMISDSILKIIKIRSAGRRTIKELLENQGIKTSEHEIRKILNYLQHKGFITYGKGR
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEECCCC
KGVELTHSGKKLNH
CCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA