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The map label for this gene is rnfB [H]

Identifier: 188585138

GI number: 188585138

Start: 526905

End: 527711

Strand: Direct

Name: rnfB [H]

Synonym: Nther_0499

Alternate gene names: 188585138

Gene position: 526905-527711 (Clockwise)

Preceding gene: 188585137

Following gene: 188585139

Centisome position: 16.64

GC content: 41.64

Gene sequence:

>807_bases
TTGTATGCAGCAGTACTGAGTCTAGGAGGATTAGGGCTGTTTTTTGGCCTGGTGCTAGCTTATGCTTCCCAAAAATTCGC
AGTAGAGGTAGATCCAAAAGTGGAAGCCATTGATGAGAGCTTACCTGGCGCTAATTGTGGGGCTTGTGGTTATCCCGGTT
GCGGCGCTTTTGCAGAAGCTGTAGCTAATGGAGAAGCTCCTATTGACGGGTGTACTCCAGGCGGAGAAAATACAGCCCAG
ACTATTGCGGACATTTTAGGAGTTAGCCATGAGGAATCTGAGGAAAGATATGTAGCCGAAGTGGCATGCCTTGGTGGAAG
TGAACATTGTAAGGAACAATTTGATTACGATGGTGTTCAGGACTGCAGAGCAGCTATGATGTATGCTAACGGATTTAAAG
CTTGCGATTATGGTTGCTTAGGTTTAGGTACTTGTGAACACATCTGTCCTTTTGATGCCATTGAAATGCAAGATAATGGG
ATACCTCATATTGATCCAGAAAAATGTACAGGATGTAATAAGTGTGCTAATACTTGCCCCAAAGATGTCATTAAAATGAT
TAATGCAAATACTAAACACCATGTTAGATGTAATTCATGTGACAAGGGGAAAACAGTTAGACAGGTTTGTGAAGTTGGTT
GTATCGGATGTGGTGTTTGTGCCAAGGTTTGTCCTGTTGATGCTATTACTATTGAAAATAACCTGGCCTATATAGACAGC
CACGAATGCGTTAACTGTGGAAAATGTAAGGAAAAATGCCCTAGAGATTGTATAACTAGTGATCTAGAATATACTACAAA
GGCATAA

Upstream 100 bases:

>100_bases
TGGCATTTATTATAGCAGGAATTCTTTCCATTGCTTTTACTGGTTTTCTTGGTGTAATATAATGAATAGAGGTAGAGGTT
GAACTTGGGAGGTGAAATAA

Downstream 100 bases:

>100_bases
TATTAAGTACAAGGGACAGTGCGATTGGGGTTACCCCTTTCGCACTGCTTTTGTTATTGGGAGGTGTTAAATTCATGGTT
GATGAATTTACCCATTTAGA

Product: electron transport complex, RnfABCDGE type, B subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MYAAVLSLGGLGLFFGLVLAYASQKFAVEVDPKVEAIDESLPGANCGACGYPGCGAFAEAVANGEAPIDGCTPGGENTAQ
TIADILGVSHEESEERYVAEVACLGGSEHCKEQFDYDGVQDCRAAMMYANGFKACDYGCLGLGTCEHICPFDAIEMQDNG
IPHIDPEKCTGCNKCANTCPKDVIKMINANTKHHVRCNSCDKGKTVRQVCEVGCIGCGVCAKVCPVDAITIENNLAYIDS
HECVNCGKCKEKCPRDCITSDLEYTTKA

Sequences:

>Translated_268_residues
MYAAVLSLGGLGLFFGLVLAYASQKFAVEVDPKVEAIDESLPGANCGACGYPGCGAFAEAVANGEAPIDGCTPGGENTAQ
TIADILGVSHEESEERYVAEVACLGGSEHCKEQFDYDGVQDCRAAMMYANGFKACDYGCLGLGTCEHICPFDAIEMQDNG
IPHIDPEKCTGCNKCANTCPKDVIKMINANTKHHVRCNSCDKGKTVRQVCEVGCIGCGVCAKVCPVDAITIENNLAYIDS
HECVNCGKCKEKCPRDCITSDLEYTTKA
>Mature_268_residues
MYAAVLSLGGLGLFFGLVLAYASQKFAVEVDPKVEAIDESLPGANCGACGYPGCGAFAEAVANGEAPIDGCTPGGENTAQ
TIADILGVSHEESEERYVAEVACLGGSEHCKEQFDYDGVQDCRAAMMYANGFKACDYGCLGLGTCEHICPFDAIEMQDNG
IPHIDPEKCTGCNKCANTCPKDVIKMINANTKHHVRCNSCDKGKTVRQVCEVGCIGCGVCAKVCPVDAITIENNLAYIDS
HECVNCGKCKEKCPRDCITSDLEYTTKA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=188, Percent_Identity=38.2978723404255, Blast_Score=108, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 28374; Mature: 28374

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

10.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
11.9 %Cys+Met (Translated Protein)
10.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
11.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAAVLSLGGLGLFFGLVLAYASQKFAVEVDPKVEAIDESLPGANCGACGYPGCGAFAEA
CCHHHHHHCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCHHHHHHH
VANGEAPIDGCTPGGENTAQTIADILGVSHEESEERYVAEVACLGGSEHCKEQFDYDGVQ
HHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCHH
DCRAAMMYANGFKACDYGCLGLGTCEHICPFDAIEMQDNGIPHIDPEKCTGCNKCANTCP
HHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCHHHCCCHHHHHHCCH
KDVIKMINANTKHHVRCNSCDKGKTVRQVCEVGCIGCGVCAKVCPVDAITIENNLAYIDS
HHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCEEEECC
HECVNCGKCKEKCPRDCITSDLEYTTKA
CCCCCCHHHHHHCCHHHHHCCCCHHCCC
>Mature Secondary Structure
MYAAVLSLGGLGLFFGLVLAYASQKFAVEVDPKVEAIDESLPGANCGACGYPGCGAFAEA
CCHHHHHHCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCHHHHHHH
VANGEAPIDGCTPGGENTAQTIADILGVSHEESEERYVAEVACLGGSEHCKEQFDYDGVQ
HHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCHH
DCRAAMMYANGFKACDYGCLGLGTCEHICPFDAIEMQDNGIPHIDPEKCTGCNKCANTCP
HHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCHHHCCCHHHHHHCCH
KDVIKMINANTKHHVRCNSCDKGKTVRQVCEVGCIGCGVCAKVCPVDAITIENNLAYIDS
HHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCEEEECC
HECVNCGKCKEKCPRDCITSDLEYTTKA
CCCCCCHHHHHHCCHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA