Click here to switch to the map view.

The map label for this gene is tnsD [H]

Identifier: 188584890

GI number: 188584890

Start: 260631

End: 262523

Strand: Direct

Name: tnsD [H]

Synonym: Nther_0248

Alternate gene names: 188584890

Gene position: 260631-262523 (Clockwise)

Preceding gene: 188584889

Following gene: 188584891

Centisome position: 8.23

GC content: 33.28

Gene sequence:

>1893_bases
ATGCTTACTTTTTTTACTGACCCCTATAAAGATGAACTACTTTATTCTGCTTTTGCTAGATATCATTTTTTGTCTGGAAA
TATTGATTTAAAGGATACTTTACGAGAATTATTTGGAAAAGATTCTGTTATACCAAATTTTGAACTAGGAAGTAACCTTA
ATGTACTTTGCCAGAAAATTGGTACTCATTATAACGCTATGGAATTAATTAAGAAACATACAGTATTCCCATATTATAGT
CCATTCCTTCCCGAACAAAGAAAACAGGAGATAATAAATAATATTTGCACTTCTGATGCAGTCGGTATATTCAACAAAAT
TGGAATTATAGCAGGAAGCATATCTGGTAAAGAAGGGATCTGGTATTGTCCTGACTGTGCAGGTAATGATTTAAAAGAGT
TTGGTGAAGTTTATATACATCGTGAACATCAACTCCAAGGTATTTGGTTGTGTCCTCATCATGATTGTTTTTTGTTAAGG
TATCCATTTGATAAAACTAATACGAGTAGGATTGAATATATAAAATTAAATGACGATCTTATGCTTAAAGATTGTAATAG
AGCTGAAGATACTGATTTACACAGTAAGCATAAGCTTGTATCCAAGGCTGCATACTTTCTTTTGAATAATGATCTGTCTG
AAGCTAACAAGGATACCATTTTAAAAAGATACAAGAGCTTATTATTTGATAGAGATTTAGCTAACACAAACTTGAGAGTG
AGGCAGAAGGATTTACATAACAGCCTTGTGGGGTACTTTGGTGAGCACTTTTTAAATGTTCTTCAGTCTTTACCGGATGA
AAATGACGAGTATAACTGGCTTCGTGTAGCCACTAGAAATGTTAAAAGAACAGTTCCTCCTTTGAGGCATATTTTATTAA
TCACTTTCCTAACAGACGGTCACATAGAGAGATTTTTTGATGATATTAAAGTTGAAAACAAACCTTTTGGGGGTGGCCCC
TGGCCTTGCCTTAACACTGCTTCAAACCATTACAAGAAAAATGTAATTAACGAAGTTACAGTAGCAGCTGATTATAAAAC
TAGAAAACCTGTAGGTACTTTTGAATGTTCTTGTGGTTTCACTTATTCTAGAAGAGGGCCGGATAAATCAAATAGTGATA
AATACAGAATTGGTCGGATTAAAAATTTTGGTCCTATTTGGGAAGGACGATTAAGATATTTATTAGAGCAGGGAAGTTTA
AGCCAGAATGCTATAGCTAAAGAGCTCAATTGCGCTTCAGGGACAGTAAAAAAATACAAGCAAAAGCTTTTTTCTGAGGG
TCGTAGTACCTCTAAAAGTAACGATATAATGAAGAAAACTAAAAGTTACGGTAGAAATTTGCTTGAAAAGTATAAAGGGT
TAATTGAAAATTGTGTCTGTAGTAAAAAACTTTCTAGGACAGAGATACGCACTCAGTTTAGTAAAGAATATACATATCTT
TACCGTCATGACAGAGATTGGTTGTTTGCTACTATGCCTCCTGCCAAAAAACCGGTGGCTATACCTAATAATAGAGTGAA
TTGGCAAGAAAGAGATGAAAAATTATTAGAAGCTTATAAAAAGGCATATTCTAAGCTCCTTAACTTGGACGAACCAATAA
GAATTACTAAAACAAGACTTGGAAGAGAAACAGGCACATTAAGTTTGATTCAAAATAATTCCAACAAATTGCCTTTATCT
ACTGCATATTTAGAGTCAATATCTGAAACCAAACAAGCCTTTCAGATACGTAGATGTACAAATATTATTGAAAATAAAAT
TAAAGAAGGTTTGCCTGTTAGACTTTGGGAAATGCAAAGAGAAGCAGGTTTAAATAAAGAAGATTTTAAGAAGCTCAAAC
CAGAATTAGAAAGGATTATTGATAGTATAAAGGGGGCCATTAGAAGTGAGTAA

Upstream 100 bases:

>100_bases
GATAGTGCAATAGATAAAAGCCAACATCCCTATGATGCTTTTAAGAGGGAAAAGTTAATAAAAGATCCACTAGATGAATT
TCTGAGGGTGGATTAACAGT

Downstream 100 bases:

>100_bases
ACCAAGAATAAGAACTAAGGATTGGCCCTTTGCTAAGAATGTGAAAGCGCGGCTCATGAGAATTAGTAAACCGTATAAAA
AGGAGAATAGGTGGTATATC

Product: Tn7-like transposition protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 630; Mature: 630

Protein sequence:

>630_residues
MLTFFTDPYKDELLYSAFARYHFLSGNIDLKDTLRELFGKDSVIPNFELGSNLNVLCQKIGTHYNAMELIKKHTVFPYYS
PFLPEQRKQEIINNICTSDAVGIFNKIGIIAGSISGKEGIWYCPDCAGNDLKEFGEVYIHREHQLQGIWLCPHHDCFLLR
YPFDKTNTSRIEYIKLNDDLMLKDCNRAEDTDLHSKHKLVSKAAYFLLNNDLSEANKDTILKRYKSLLFDRDLANTNLRV
RQKDLHNSLVGYFGEHFLNVLQSLPDENDEYNWLRVATRNVKRTVPPLRHILLITFLTDGHIERFFDDIKVENKPFGGGP
WPCLNTASNHYKKNVINEVTVAADYKTRKPVGTFECSCGFTYSRRGPDKSNSDKYRIGRIKNFGPIWEGRLRYLLEQGSL
SQNAIAKELNCASGTVKKYKQKLFSEGRSTSKSNDIMKKTKSYGRNLLEKYKGLIENCVCSKKLSRTEIRTQFSKEYTYL
YRHDRDWLFATMPPAKKPVAIPNNRVNWQERDEKLLEAYKKAYSKLLNLDEPIRITKTRLGRETGTLSLIQNNSNKLPLS
TAYLESISETKQAFQIRRCTNIIENKIKEGLPVRLWEMQREAGLNKEDFKKLKPELERIIDSIKGAIRSE

Sequences:

>Translated_630_residues
MLTFFTDPYKDELLYSAFARYHFLSGNIDLKDTLRELFGKDSVIPNFELGSNLNVLCQKIGTHYNAMELIKKHTVFPYYS
PFLPEQRKQEIINNICTSDAVGIFNKIGIIAGSISGKEGIWYCPDCAGNDLKEFGEVYIHREHQLQGIWLCPHHDCFLLR
YPFDKTNTSRIEYIKLNDDLMLKDCNRAEDTDLHSKHKLVSKAAYFLLNNDLSEANKDTILKRYKSLLFDRDLANTNLRV
RQKDLHNSLVGYFGEHFLNVLQSLPDENDEYNWLRVATRNVKRTVPPLRHILLITFLTDGHIERFFDDIKVENKPFGGGP
WPCLNTASNHYKKNVINEVTVAADYKTRKPVGTFECSCGFTYSRRGPDKSNSDKYRIGRIKNFGPIWEGRLRYLLEQGSL
SQNAIAKELNCASGTVKKYKQKLFSEGRSTSKSNDIMKKTKSYGRNLLEKYKGLIENCVCSKKLSRTEIRTQFSKEYTYL
YRHDRDWLFATMPPAKKPVAIPNNRVNWQERDEKLLEAYKKAYSKLLNLDEPIRITKTRLGRETGTLSLIQNNSNKLPLS
TAYLESISETKQAFQIRRCTNIIENKIKEGLPVRLWEMQREAGLNKEDFKKLKPELERIIDSIKGAIRSE
>Mature_630_residues
MLTFFTDPYKDELLYSAFARYHFLSGNIDLKDTLRELFGKDSVIPNFELGSNLNVLCQKIGTHYNAMELIKKHTVFPYYS
PFLPEQRKQEIINNICTSDAVGIFNKIGIIAGSISGKEGIWYCPDCAGNDLKEFGEVYIHREHQLQGIWLCPHHDCFLLR
YPFDKTNTSRIEYIKLNDDLMLKDCNRAEDTDLHSKHKLVSKAAYFLLNNDLSEANKDTILKRYKSLLFDRDLANTNLRV
RQKDLHNSLVGYFGEHFLNVLQSLPDENDEYNWLRVATRNVKRTVPPLRHILLITFLTDGHIERFFDDIKVENKPFGGGP
WPCLNTASNHYKKNVINEVTVAADYKTRKPVGTFECSCGFTYSRRGPDKSNSDKYRIGRIKNFGPIWEGRLRYLLEQGSL
SQNAIAKELNCASGTVKKYKQKLFSEGRSTSKSNDIMKKTKSYGRNLLEKYKGLIENCVCSKKLSRTEIRTQFSKEYTYL
YRHDRDWLFATMPPAKKPVAIPNNRVNWQERDEKLLEAYKKAYSKLLNLDEPIRITKTRLGRETGTLSLIQNNSNKLPLS
TAYLESISETKQAFQIRRCTNIIENKIKEGLPVRLWEMQREAGLNKEDFKKLKPELERIIDSIKGAIRSE

Specific function: TnsABC + tnsD promote high-frequency insertion of Tn7 into a specific target site known as att-Tn7 whereas tnsABC + tnsE promote low-frequency insertion into many different sites [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 73050; Mature: 73050

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTFFTDPYKDELLYSAFARYHFLSGNIDLKDTLRELFGKDSVIPNFELGSNLNVLCQKI
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
GTHYNAMELIKKHTVFPYYSPFLPEQRKQEIINNICTSDAVGIFNKIGIIAGSISGKEGI
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHEEECCCCCCCC
WYCPDCAGNDLKEFGEVYIHREHQLQGIWLCPHHDCFLLRYPFDKTNTSRIEYIKLNDDL
EECCCCCCCHHHHHHHHHEEECCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEEECCCE
MLKDCNRAEDTDLHSKHKLVSKAAYFLLNNDLSEANKDTILKRYKSLLFDRDLANTNLRV
EECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
RQKDLHNSLVGYFGEHFLNVLQSLPDENDEYNWLRVATRNVKRTVPPLRHILLITFLTDG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHCCC
HIERFFDDIKVENKPFGGGPWPCLNTASNHYKKNVINEVTVAADYKTRKPVGTFECSCGF
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCEEECCCC
TYSRRGPDKSNSDKYRIGRIKNFGPIWEGRLRYLLEQGSLSQNAIAKELNCASGTVKKYK
EECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHH
QKLFSEGRSTSKSNDIMKKTKSYGRNLLEKYKGLIENCVCSKKLSRTEIRTQFSKEYTYL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
YRHDRDWLFATMPPAKKPVAIPNNRVNWQERDEKLLEAYKKAYSKLLNLDEPIRITKTRL
EEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
GRETGTLSLIQNNSNKLPLSTAYLESISETKQAFQIRRCTNIIENKIKEGLPVRLWEMQR
CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EAGLNKEDFKKLKPELERIIDSIKGAIRSE
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLTFFTDPYKDELLYSAFARYHFLSGNIDLKDTLRELFGKDSVIPNFELGSNLNVLCQKI
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
GTHYNAMELIKKHTVFPYYSPFLPEQRKQEIINNICTSDAVGIFNKIGIIAGSISGKEGI
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHEEECCCCCCCC
WYCPDCAGNDLKEFGEVYIHREHQLQGIWLCPHHDCFLLRYPFDKTNTSRIEYIKLNDDL
EECCCCCCCHHHHHHHHHEEECCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEEECCCE
MLKDCNRAEDTDLHSKHKLVSKAAYFLLNNDLSEANKDTILKRYKSLLFDRDLANTNLRV
EECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
RQKDLHNSLVGYFGEHFLNVLQSLPDENDEYNWLRVATRNVKRTVPPLRHILLITFLTDG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHCCC
HIERFFDDIKVENKPFGGGPWPCLNTASNHYKKNVINEVTVAADYKTRKPVGTFECSCGF
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCEEECCCC
TYSRRGPDKSNSDKYRIGRIKNFGPIWEGRLRYLLEQGSLSQNAIAKELNCASGTVKKYK
EECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHH
QKLFSEGRSTSKSNDIMKKTKSYGRNLLEKYKGLIENCVCSKKLSRTEIRTQFSKEYTYL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
YRHDRDWLFATMPPAKKPVAIPNNRVNWQERDEKLLEAYKKAYSKLLNLDEPIRITKTRL
EEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
GRETGTLSLIQNNSNKLPLSTAYLESISETKQAFQIRRCTNIIENKIKEGLPVRLWEMQR
CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EAGLNKEDFKKLKPELERIIDSIKGAIRSE
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2156235; 1655576 [H]