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The map label for this gene is ybbR [H]

Identifier: 188584883

GI number: 188584883

Start: 249757

End: 251004

Strand: Direct

Name: ybbR [H]

Synonym: Nther_0241

Alternate gene names: 188584883

Gene position: 249757-251004 (Clockwise)

Preceding gene: 188584882

Following gene: 188584884

Centisome position: 7.89

GC content: 39.18

Gene sequence:

>1248_bases
TTGAAACAATTATTTTCACAGAACGGGCTTTTGAAGTTATTATCAATTGCTCTAGCTTTATTGTTATGGATGTTTGTAAG
CACCGATGCCGATGATATGGCCACCAGGGAAATTAGTAGAAGATATGATGGTATCCAGCCTTCAGTTCGCAATCAGGATC
CTGATTTGATCTTAGTAGGTGATCCCCAGACAGTATCAGCGTCATTGAGAGGTACTCGCACCATGTTGAACCGAGTTGAA
AAAGATGAACTGGTGTTTTATGTTGATTTGGAGGGTTTGGAAGCGGGTACGCACCGAGTCCCGGTATCTTCCAGTGTGCC
TCAATTTGATGTAACTGATATTCAACCATCGGAAGTTGAAATTACTCTTGATGAACGAATAGAGGAAACCTTTGCAGTCG
ACCATGATGTCATTGGAACACCTGATGAAGGGTTGCAAGCACTGGAGCCTGAAATTAATCCTTCAACTGTAACTATTTCT
GGAGCCAAAACATATATTGAACAGGTTGAAAGGGTTGTGGCACGAGTTGATATTACAGGAACTGTAGACTACTTGGAAAA
GGGCATTGTAGTTGATATTTATGATGAAAACGGTGAAATCATGGAAGAACTAGAAGTTAGTCCAGGTATGGTGGAAGTTA
AAATCCCCATGAACTATCCTGAAAAAGAAGTCCCTGTAGAAGTCGATATTGAGGATAATTTACCGGAATTCTATTTGGAA
TCAGTGGAAATTTCTCCAGAACAAGTTGAAGTTGGTGGATGGGAAAGTGTTATTAATGAACTTGAATATATTAAAACAGA
GACGATTGGTTTAGATCGTTTCCTAGAGGAAGAAACAGTGGTAGCTTCACTGGAACGTCCCGAAGGTATAAAGGAAATTT
CAGATCAAAATGTGATAGTAGAGGGACAAATTTCACAAACACAAGAGGAAAGCTTTGAAATCCCTGTTGATTTACCAGAG
GAATTAGCGAATGAACTAGCAAATAGCCAATGGGAAATTGAGCCCGAAATTATTACAGTTTCTGTGGCTGGTGAACCAGA
AGATATGACCGCTCTAGATAAAAATGATATTGAAGTCTATTTAACAATGGACGATGTGCCAGAAGAGGATCTAGAGACAG
TTGAGGAATCAGAGGCAGTTGAGGAACTAGTAGAAGAATTGGATGTAGAAGTGCAGTTACAAAACGATAATTTAAGACTA
GTAAAAGTAGATCCGTTAAAAGTCAACCTAATTAAGGGTGAAGAATAA

Upstream 100 bases:

>100_bases
CGCGTTATTTAGATGAAGACGAACTGGAAAGTTTATTGATCAAGTTGTGGGGAGGTCATGAACACCAATCTAAGAGCTTT
TGGCAATGGAGGTTAGGAAA

Downstream 100 bases:

>100_bases
AATATAATGACAAATATTTTTTGGTACAAAAAATCTATGGGTTTTAACTGATTTTTAACTTGTGAGAACTGATTTACTAC
GAAAGGGAGTGAAACTGATG

Product: YbbR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MKQLFSQNGLLKLLSIALALLLWMFVSTDADDMATREISRRYDGIQPSVRNQDPDLILVGDPQTVSASLRGTRTMLNRVE
KDELVFYVDLEGLEAGTHRVPVSSSVPQFDVTDIQPSEVEITLDERIEETFAVDHDVIGTPDEGLQALEPEINPSTVTIS
GAKTYIEQVERVVARVDITGTVDYLEKGIVVDIYDENGEIMEELEVSPGMVEVKIPMNYPEKEVPVEVDIEDNLPEFYLE
SVEISPEQVEVGGWESVINELEYIKTETIGLDRFLEEETVVASLERPEGIKEISDQNVIVEGQISQTQEESFEIPVDLPE
ELANELANSQWEIEPEIITVSVAGEPEDMTALDKNDIEVYLTMDDVPEEDLETVEESEAVEELVEELDVEVQLQNDNLRL
VKVDPLKVNLIKGEE

Sequences:

>Translated_415_residues
MKQLFSQNGLLKLLSIALALLLWMFVSTDADDMATREISRRYDGIQPSVRNQDPDLILVGDPQTVSASLRGTRTMLNRVE
KDELVFYVDLEGLEAGTHRVPVSSSVPQFDVTDIQPSEVEITLDERIEETFAVDHDVIGTPDEGLQALEPEINPSTVTIS
GAKTYIEQVERVVARVDITGTVDYLEKGIVVDIYDENGEIMEELEVSPGMVEVKIPMNYPEKEVPVEVDIEDNLPEFYLE
SVEISPEQVEVGGWESVINELEYIKTETIGLDRFLEEETVVASLERPEGIKEISDQNVIVEGQISQTQEESFEIPVDLPE
ELANELANSQWEIEPEIITVSVAGEPEDMTALDKNDIEVYLTMDDVPEEDLETVEESEAVEELVEELDVEVQLQNDNLRL
VKVDPLKVNLIKGEE
>Mature_415_residues
MKQLFSQNGLLKLLSIALALLLWMFVSTDADDMATREISRRYDGIQPSVRNQDPDLILVGDPQTVSASLRGTRTMLNRVE
KDELVFYVDLEGLEAGTHRVPVSSSVPQFDVTDIQPSEVEITLDERIEETFAVDHDVIGTPDEGLQALEPEINPSTVTIS
GAKTYIEQVERVVARVDITGTVDYLEKGIVVDIYDENGEIMEELEVSPGMVEVKIPMNYPEKEVPVEVDIEDNLPEFYLE
SVEISPEQVEVGGWESVINELEYIKTETIGLDRFLEEETVVASLERPEGIKEISDQNVIVEGQISQTQEESFEIPVDLPE
ELANELANSQWEIEPEIITVSVAGEPEDMTALDKNDIEVYLTMDDVPEEDLETVEESEAVEELVEELDVEVQLQNDNLRL
VKVDPLKVNLIKGEE

Specific function: Unknown

COG id: COG4856

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 YbbR-like domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012505 [H]

Pfam domain/function: PF07949 YbbR [H]

EC number: NA

Molecular weight: Translated: 46592; Mature: 46592

Theoretical pI: Translated: 3.65; Mature: 3.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLFSQNGLLKLLSIALALLLWMFVSTDADDMATREISRRYDGIQPSVRNQDPDLILVG
CCCHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
DPQTVSASLRGTRTMLNRVEKDELVFYVDLEGLEAGTHRVPVSSSVPQFDVTDIQPSEVE
CCCEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
ITLDERIEETFAVDHDVIGTPDEGLQALEPEINPSTVTISGAKTYIEQVERVVARVDITG
EEHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCE
TVDYLEKGIVVDIYDENGEIMEELEVSPGMVEVKIPMNYPEKEVPVEVDIEDNLPEFYLE
EHHHHHCCCEEEEECCCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHH
SVEISPEQVEVGGWESVINELEYIKTETIGLDRFLEEETVVASLERPEGIKEISDQNVIV
HCCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCCCEEE
EGQISQTQEESFEIPVDLPEELANELANSQWEIEPEIITVSVAGEPEDMTALDKNDIEVY
ECCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCEEEEEEECCCCCCCCCCCCCCEEEE
LTMDDVPEEDLETVEESEAVEELVEELDVEVQLQNDNLRLVKVDPLKVNLIKGEE
EEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCEEEEEEECCC
>Mature Secondary Structure
MKQLFSQNGLLKLLSIALALLLWMFVSTDADDMATREISRRYDGIQPSVRNQDPDLILVG
CCCHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
DPQTVSASLRGTRTMLNRVEKDELVFYVDLEGLEAGTHRVPVSSSVPQFDVTDIQPSEVE
CCCEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
ITLDERIEETFAVDHDVIGTPDEGLQALEPEINPSTVTISGAKTYIEQVERVVARVDITG
EEHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCE
TVDYLEKGIVVDIYDENGEIMEELEVSPGMVEVKIPMNYPEKEVPVEVDIEDNLPEFYLE
EHHHHHCCCEEEEECCCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHH
SVEISPEQVEVGGWESVINELEYIKTETIGLDRFLEEETVVASLERPEGIKEISDQNVIV
HCCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCCCEEE
EGQISQTQEESFEIPVDLPEELANELANSQWEIEPEIITVSVAGEPEDMTALDKNDIEVY
ECCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCEEEEEEECCCCCCCCCCCCCCEEEE
LTMDDVPEEDLETVEESEAVEELVEELDVEVQLQNDNLRLVKVDPLKVNLIKGEE
EEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]