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The map label for this gene is ydeB [H]

Identifier: 188584806

GI number: 188584806

Start: 188118

End: 188603

Strand: Direct

Name: ydeB [H]

Synonym: Nther_0164

Alternate gene names: 188584806

Gene position: 188118-188603 (Clockwise)

Preceding gene: 188584805

Following gene: 188584807

Centisome position: 5.94

GC content: 33.13

Gene sequence:

>486_bases
GTGTTTAAAAAAGGGGATAAAGTGGTTTATCCCATGCATGGCGCGGGTGTTATTGAAGGGGTTGAAGAACGGGAAGTTTT
AGGTAAAAAACACATGTATTATATTATGAAGATTCCTGTGGGAGATATGAAAGTTATGATTCCCAAAGAAAGAGTTGATG
CTATAGGACTTAGAGAAATCGTTGATAAAAATAGTGTAAAAAAAGTTTTGGCTATTTTAAAAGCTGAGGAAACTAATGTA
AATCACAACTGGAATCAAAGATACAGGGCTAACTTAGAAAAAATCAGGAGCGGTGATATTTACCAAGTCGCTGAAGTTAT
TAGGAACCTGGTATTTTTAGATGATGAGAAAGGTCTTTCAACAGGTGAAAAGAAAATGCTTGAAAATGCCAAGCAAATAT
TAGTTAGTGAATTAGTTCTTGCTAAGGATATTGAAGAAGAACAAGCTCATGAAATTATAAATGATACTTTATTAACAACT
TCATAA

Upstream 100 bases:

>100_bases
TGACAATAAAAAAGTCGTGTGATATACTATTTTAATTTGACTTACAAATGCCAATGTGTTATCATATTTTATATACTGGT
GTTCTGAGAGGAGGATTCAT

Downstream 100 bases:

>100_bases
TCATATTAAAGTGATTAACAGGGGTATTATCATTTTAACCGCCAAAAAATTATCAAGTTAAAAAAGCTTATTCAAACAAA
CTTAACTGAATTTACTCGAA

Product: transcriptional regulator, CarD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MFKKGDKVVYPMHGAGVIEGVEEREVLGKKHMYYIMKIPVGDMKVMIPKERVDAIGLREIVDKNSVKKVLAILKAEETNV
NHNWNQRYRANLEKIRSGDIYQVAEVIRNLVFLDDEKGLSTGEKKMLENAKQILVSELVLAKDIEEEQAHEIINDTLLTT
S

Sequences:

>Translated_161_residues
MFKKGDKVVYPMHGAGVIEGVEEREVLGKKHMYYIMKIPVGDMKVMIPKERVDAIGLREIVDKNSVKKVLAILKAEETNV
NHNWNQRYRANLEKIRSGDIYQVAEVIRNLVFLDDEKGLSTGEKKMLENAKQILVSELVLAKDIEEEQAHEIINDTLLTT
S
>Mature_161_residues
MFKKGDKVVYPMHGAGVIEGVEEREVLGKKHMYYIMKIPVGDMKVMIPKERVDAIGLREIVDKNSVKKVLAILKAEETNV
NHNWNQRYRANLEKIRSGDIYQVAEVIRNLVFLDDEKGLSTGEKKMLENAKQILVSELVLAKDIEEEQAHEIINDTLLTT
S

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 18378; Mature: 18378

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKGDKVVYPMHGAGVIEGVEEREVLGKKHMYYIMKIPVGDMKVMIPKERVDAIGLREI
CCCCCCEEEEECCCCHHHCCCHHHHHHCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHH
VDKNSVKKVLAILKAEETNVNHNWNQRYRANLEKIRSGDIYQVAEVIRNLVFLDDEKGLS
HCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCC
TGEKKMLENAKQILVSELVLAKDIEEEQAHEIINDTLLTTS
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFKKGDKVVYPMHGAGVIEGVEEREVLGKKHMYYIMKIPVGDMKVMIPKERVDAIGLREI
CCCCCCEEEEECCCCHHHCCCHHHHHHCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHH
VDKNSVKKVLAILKAEETNVNHNWNQRYRANLEKIRSGDIYQVAEVIRNLVFLDDEKGLS
HCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCC
TGEKKMLENAKQILVSELVLAKDIEEEQAHEIINDTLLTTS
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]