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The map label for this gene is ytqB [H]

Identifier: 188584795

GI number: 188584795

Start: 177755

End: 178327

Strand: Direct

Name: ytqB [H]

Synonym: Nther_0153

Alternate gene names: 188584795

Gene position: 177755-178327 (Clockwise)

Preceding gene: 188584793

Following gene: 188584796

Centisome position: 5.62

GC content: 36.3

Gene sequence:

>573_bases
GTGCAAATAAACCCTTTTAATAAACCTACAGAAATAGATAAACAGTTATTGGACGGTGTGATATCACAAGGTGATAGAGT
AGTTGATGCAACTTGTGGGAATGGACACGATACTGAATATTTAGCCAATCGAGTTGGTGATCAGGGGCTTGTGTATGCTT
TTGATATTCAAAAGCAAGCTCTTGAAACTACTTGGAAACGTTTACAGCAGGAGGGACTGCATGAGCGAGTAAGATTACTT
AATAAAGGTCACGAAAAATTGATTGAGGATGTGGAAGGGCCGGTTAGTTGTGTTATGTTTAATTTAGGTTATTTGCCTGG
TAGTGACAAGAAGGTAGTGACAGAACCTCAGAATACTATCCGAGCTATTGAAGGAGCTTTAAGTTTATTGAAGGCCGGTG
GATTATTGACAATAGTATTATATCCAGGTCATGAGACAGGAATGATAGAATCTCAAGTGGTTCAAGATTACCTTATGAGA
CTAGATCAGACTAAATTCCATACAAAGAAAATTATATCTTTAAATTTTAAAAACAATCCACCGTATCTAATGGCAGTTTT
AAAAAACAAGTAA

Upstream 100 bases:

>100_bases
AATTACATGTATCTCTTTATAAGTTCGCGCTTTAGCCGTTATTTTCCTGTTGTTAATATGGCTAATCCCGTAATTTAATT
TCATAGGTGAGGTGAACAAG

Downstream 100 bases:

>100_bases
AAACTAGACAGTGAATTGCGGTTTGAACATACGATAGGGGGGAAAGTTATGAGATTGGGTTTTCACATGCCCCTTTCGGG
TGGTGTGGGTAAACAATTAA

Product: putative rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MQINPFNKPTEIDKQLLDGVISQGDRVVDATCGNGHDTEYLANRVGDQGLVYAFDIQKQALETTWKRLQQEGLHERVRLL
NKGHEKLIEDVEGPVSCVMFNLGYLPGSDKKVVTEPQNTIRAIEGALSLLKAGGLLTIVLYPGHETGMIESQVVQDYLMR
LDQTKFHTKKIISLNFKNNPPYLMAVLKNK

Sequences:

>Translated_190_residues
MQINPFNKPTEIDKQLLDGVISQGDRVVDATCGNGHDTEYLANRVGDQGLVYAFDIQKQALETTWKRLQQEGLHERVRLL
NKGHEKLIEDVEGPVSCVMFNLGYLPGSDKKVVTEPQNTIRAIEGALSLLKAGGLLTIVLYPGHETGMIESQVVQDYLMR
LDQTKFHTKKIISLNFKNNPPYLMAVLKNK
>Mature_190_residues
MQINPFNKPTEIDKQLLDGVISQGDRVVDATCGNGHDTEYLANRVGDQGLVYAFDIQKQALETTWKRLQQEGLHERVRLL
NKGHEKLIEDVEGPVSCVMFNLGYLPGSDKKVVTEPQNTIRAIEGALSLLKAGGLLTIVLYPGHETGMIESQVVQDYLMR
LDQTKFHTKKIISLNFKNNPPYLMAVLKNK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010719 [H]

Pfam domain/function: PF06962 rRNA_methylase [H]

EC number: NA

Molecular weight: Translated: 21319; Mature: 21319

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINPFNKPTEIDKQLLDGVISQGDRVVDATCGNGHDTEYLANRVGDQGLVYAFDIQKQA
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCEEEEHHHHHH
LETTWKRLQQEGLHERVRLLNKGHEKLIEDVEGPVSCVMFNLGYLPGSDKKVVTEPQNTI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEECCHHHH
RAIEGALSLLKAGGLLTIVLYPGHETGMIESQVVQDYLMRLDQTKFHTKKIISLNFKNNP
HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHEEEEEEEECCCC
PYLMAVLKNK
CEEEEEECCC
>Mature Secondary Structure
MQINPFNKPTEIDKQLLDGVISQGDRVVDATCGNGHDTEYLANRVGDQGLVYAFDIQKQA
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCEEEEHHHHHH
LETTWKRLQQEGLHERVRLLNKGHEKLIEDVEGPVSCVMFNLGYLPGSDKKVVTEPQNTI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEECCHHHH
RAIEGALSLLKAGGLLTIVLYPGHETGMIESQVVQDYLMRLDQTKFHTKKIISLNFKNNP
HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHEEEEEEEECCCC
PYLMAVLKNK
CEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]