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The map label for this gene is abrB [H]

Identifier: 188584684

GI number: 188584684

Start: 56542

End: 56793

Strand: Reverse

Name: abrB [H]

Synonym: Nther_0042

Alternate gene names: 188584684

Gene position: 56793-56542 (Counterclockwise)

Preceding gene: 188584691

Following gene: 188584682

Centisome position: 1.79

GC content: 37.7

Gene sequence:

>252_bases
ATGAAATCTACTGGTCTTGTACGCAGAGTGGACGAGTTAGGCAGAATAGTAATTCCCATTGAACTTAGGCGCAATTTAGG
AATTGAACAGAAAGATGCCCTTGAGATTTTTATAGAAGGGGAACAAATTATTCTGAAAAAGTATGAGCCCGCTTGCCTAT
TCTGTGGCACTGCCGATGAAGAAGAGATGGTTAGATACAAAAGTAAGAACATCTGTAAACATTGTATTGATCAGTTGTCT
AATGAATCTTAA

Upstream 100 bases:

>100_bases
GTATTTGCTTTCATTTTTTTCTTTTAATTTATTAAATAATTTGATATACTGTAAATAGATGGAACTGTCGAAAGTTGTCA
AAAAAAGGGAGGGTAATAAA

Downstream 100 bases:

>100_bases
CCTAATGGTAAATTCTGAACAATAACAAAATTTCCAATCCCAATAACAGACTAAATTTTATTAGTGGCAAGCACTAAAAT
GCTTGCCACTTAATTTATTT

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 83

Protein sequence:

>83_residues
MKSTGLVRRVDELGRIVIPIELRRNLGIEQKDALEIFIEGEQIILKKYEPACLFCGTADEEEMVRYKSKNICKHCIDQLS
NES

Sequences:

>Translated_83_residues
MKSTGLVRRVDELGRIVIPIELRRNLGIEQKDALEIFIEGEQIILKKYEPACLFCGTADEEEMVRYKSKNICKHCIDQLS
NES
>Mature_83_residues
MKSTGLVRRVDELGRIVIPIELRRNLGIEQKDALEIFIEGEQIILKKYEPACLFCGTADEEEMVRYKSKNICKHCIDQLS
NES

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 9569; Mature: 9569

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGLVRRVDELGRIVIPIELRRNLGIEQKDALEIFIEGEQIILKKYEPACLFCGTADE
CCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCEEEEECCCCH
EEMVRYKSKNICKHCIDQLSNES
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKSTGLVRRVDELGRIVIPIELRRNLGIEQKDALEIFIEGEQIILKKYEPACLFCGTADE
CCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCEEEEECCCCH
EEMVRYKSKNICKHCIDQLSNES
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]