| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528201
Identifier: 188528201
GI number: 188528201
Start: 1427349
End: 1428023
Strand: Direct
Name: 188528201
Synonym: HPSH_07325
Alternate gene names: NA
Gene position: 1427349-1428023 (Clockwise)
Preceding gene: 188528199
Following gene: 188528202
Centisome position: 88.74
GC content: 34.67
Gene sequence:
>675_bases ATGAAAGCCTTTAGGGTTGATTTAGATAACGAAAAAAATCAAAATATTTTAAAACCCAGCGTGCACCCTTTTAATCACCA AGCCCATCAAGTTAATGAAGTGGCCAAAAAGATTTATGAATTGATTAAAGGCGCTAAACATCCTAACGATGGCATCATCT TAAACCACAATGAAATTAAAGAAGCCTTTTTTAGCCCGTTCAAACCGCAGCTAAAAAACACTCAAGTGTTCCTATCGCAT TCGCATGCGGATAGAAATAAGGCTTTAAAGGTTAAAGACTATTTGGAAAGCGAAACAAATCACAGAGTATTTATAGACTC GCTTTTTTGGGATTATAAAGACGATGTCTTAAACGAATTGGCAAAATACGATGATACAAGCAAAATTAAAGACGCTTTCA CGCTCATTCTCAGAGAATCTTTACAAGACATGATTGAAGAATGCCCTTATTTCGTGTTTTTAGAAAGTAAAAACAGCGTT TCCAATCAAGGGCTATCGTGCATCACTTATTCAGCATGGATTTATGAAGAATTAAAAATCGCTCATTCTATTAGCAGCAA GAGTTGCTTAACTATAGCGATGGAGAGCTTTCAAATTAGTTATGATATATCGCCATTTTTAAAAAGTCTAAAGACTATAA CCCTTAGCGAACTATCACACATAATCAATTCATAG
Upstream 100 bases:
>100_bases TTAAGCTAATTCTAGTATAATCAAAAGATTTTAAAGGAAACTTAAAATCGTGTTTGTAAAGGTTTAAGAATTTCATGAAA ATATTAAGGAAAATTATATC
Downstream 100 bases:
>100_bases GAACAAGCATGCTTTTTAAAACTTATCAAAAATTATTGGGTGCGAGCTGTTTAGCGTTGTATCTGGTGGGCTGTGGGAGT GGCGGTGGCGGTGAATCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MKAFRVDLDNEKNQNILKPSVHPFNHQAHQVNEVAKKIYELIKGAKHPNDGIILNHNEIKEAFFSPFKPQLKNTQVFLSH SHADRNKALKVKDYLESETNHRVFIDSLFWDYKDDVLNELAKYDDTSKIKDAFTLILRESLQDMIEECPYFVFLESKNSV SNQGLSCITYSAWIYEELKIAHSISSKSCLTIAMESFQISYDISPFLKSLKTITLSELSHIINS
Sequences:
>Translated_224_residues MKAFRVDLDNEKNQNILKPSVHPFNHQAHQVNEVAKKIYELIKGAKHPNDGIILNHNEIKEAFFSPFKPQLKNTQVFLSH SHADRNKALKVKDYLESETNHRVFIDSLFWDYKDDVLNELAKYDDTSKIKDAFTLILRESLQDMIEECPYFVFLESKNSV SNQGLSCITYSAWIYEELKIAHSISSKSCLTIAMESFQISYDISPFLKSLKTITLSELSHIINS >Mature_224_residues MKAFRVDLDNEKNQNILKPSVHPFNHQAHQVNEVAKKIYELIKGAKHPNDGIILNHNEIKEAFFSPFKPQLKNTQVFLSH SHADRNKALKVKDYLESETNHRVFIDSLFWDYKDDVLNELAKYDDTSKIKDAFTLILRESLQDMIEECPYFVFLESKNSV SNQGLSCITYSAWIYEELKIAHSISSKSCLTIAMESFQISYDISPFLKSLKTITLSELSHIINS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25889; Mature: 25889
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAFRVDLDNEKNQNILKPSVHPFNHQAHQVNEVAKKIYELIKGAKHPNDGIILNHNEIK CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHH EAFFSPFKPQLKNTQVFLSHSHADRNKALKVKDYLESETNHRVFIDSLFWDYKDDVLNEL HHHHCCCCCCCCCCEEEEECCCCCCCCCEEHHHHHCCCCCCEEEEHHHHHCCHHHHHHHH AKYDDTSKIKDAFTLILRESLQDMIEECPYFVFLESKNSVSNQGLSCITYSAWIYEELKI HHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHH AHSISSKSCLTIAMESFQISYDISPFLKSLKTITLSELSHIINS HHHCCCCCHHEEEHHHEEEEECHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKAFRVDLDNEKNQNILKPSVHPFNHQAHQVNEVAKKIYELIKGAKHPNDGIILNHNEIK CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHH EAFFSPFKPQLKNTQVFLSHSHADRNKALKVKDYLESETNHRVFIDSLFWDYKDDVLNEL HHHHCCCCCCCCCCEEEEECCCCCCCCCEEHHHHHCCCCCCEEEEHHHHHCCHHHHHHHH AKYDDTSKIKDAFTLILRESLQDMIEECPYFVFLESKNSVSNQGLSCITYSAWIYEELKI HHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHH AHSISSKSCLTIAMESFQISYDISPFLKSLKTITLSELSHIINS HHHCCCCCHHEEEHHHEEEEECHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA