Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

Click here to switch to the map view.

The map label for this gene is 188528137

Identifier: 188528137

GI number: 188528137

Start: 1353392

End: 1354555

Strand: Reverse

Name: 188528137

Synonym: HPSH_06980

Alternate gene names: NA

Gene position: 1354555-1353392 (Counterclockwise)

Preceding gene: 188528138

Following gene: 188528136

Centisome position: 84.21

GC content: 36.43

Gene sequence:

>1164_bases
ATGGGGTTTTTATTTGAAAAATCGTTAATGGGTTTTTGCATTCATTCAATCAAAATCGTTAAAACCATCGGTTTGATTTT
AAGCCTTTTAGCCACCTTTTTGGTCGCTGAAAACACTCATGACCCAGAAGAAATCAAGGCTAAAGTGGTTTATGTGAAAA
TCCCCCAATTAGAAGATTTGGAAAATAACCCGGTTTATATCGGTCAAATTATAGGCGTAACTTATGATTTATTGCTGTTT
GACGCTGAGTTTTTGGAAGCCAAAATCAAAGACGGGCTAGATAAAACCCAAATTGAGCTTTTAAGCAAAATGCCTAAATG
GAAAAAGGTGGAAAAAGAGCTTTTCAGAGCGACTTATTATTACAAGATTAAGGGCGTAAAAGCGAGCATTCCGCCTTTAG
AAGTGAGCGCGTTTTCCAATAAAGACAAGTATATAGATTATTCCATAGCCCCAAAAGTTACTTTGCAAGTAACGGATTTA
TCCAAAAACCCTCGTTACGCGAATGTCATGGCTAAAGATCTACAAGTTTTGCAATACAAAACCAAAGATTATGACGATAA
AAACAATATTTTGGTGGTGGAATTAGCGTTCAAAGAGGCTAATTGGGAAGATTTTCACATCAAAGAAGCGCTAAAACAAG
GGTTTGATAACGCCTCTTTAAACCAGATCAAGGCTAAAGAGGGGAGCGTTTTTTATTATTGCGTGTTGCCTAAAACCATT
CAAAACCTTTCTTTTGATTATTTTTCGCTTTCTAATAGGCAATTTAAAACCTTATCTTTCTCAACCATTCCCACTCAAGA
CACTACCGGTATTCAAAGCGATCTCATCCCTAAAAACAATTTTTTAGTCTTTTCTAATGTGGCGCTGCTCGCTTTGTGCG
TGTTTTTCTTGGTGTTGTTTTTCATTTTTGGGCGCAAACTCATTTTTTTAGGGCTTGGGATTTTGTGCTTAGGGTTTGTT
TTGTATAACCTTTTATTCACGCAAAAATCAGCCCTTTTGCTCGCTCATAAAAAAATCCGCATTCTGCCCACGCAGAATTC
CACCATTTTAGGGCTTTCTAAAAATGAAATGCCGATTAAAATTTTAGGTTCGCATGATGATTATTATAAAATCCTAACGC
CGCATGAACAAATAGGGTGGGTCAAAAAAGATGAAGTCAAATAA

Upstream 100 bases:

>100_bases
CGATGATATTCAACTAAAAACCGCTATTGACAGCTTGAAAACCTGGTCTATCGTGGATGATAAAATGGATGAAAAAACGC
CTAAGAAGAAATAAAAACTC

Downstream 100 bases:

>100_bases
AAAATCCAATCGTTTAAGAGCGATTTATAGAGCTTTAGTGATCGCTATAGGCTTAGCCGTTATCATTGTTTTCAATTATT
TTAACCGCAAAAACAATAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MGFLFEKSLMGFCIHSIKIVKTIGLILSLLATFLVAENTHDPEEIKAKVVYVKIPQLEDLENNPVYIGQIIGVTYDLLLF
DAEFLEAKIKDGLDKTQIELLSKMPKWKKVEKELFRATYYYKIKGVKASIPPLEVSAFSNKDKYIDYSIAPKVTLQVTDL
SKNPRYANVMAKDLQVLQYKTKDYDDKNNILVVELAFKEANWEDFHIKEALKQGFDNASLNQIKAKEGSVFYYCVLPKTI
QNLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLFFIFGRKLIFLGLGILCLGFV
LYNLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIKILGSHDDYYKILTPHEQIGWVKKDEVK

Sequences:

>Translated_387_residues
MGFLFEKSLMGFCIHSIKIVKTIGLILSLLATFLVAENTHDPEEIKAKVVYVKIPQLEDLENNPVYIGQIIGVTYDLLLF
DAEFLEAKIKDGLDKTQIELLSKMPKWKKVEKELFRATYYYKIKGVKASIPPLEVSAFSNKDKYIDYSIAPKVTLQVTDL
SKNPRYANVMAKDLQVLQYKTKDYDDKNNILVVELAFKEANWEDFHIKEALKQGFDNASLNQIKAKEGSVFYYCVLPKTI
QNLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLFFIFGRKLIFLGLGILCLGFV
LYNLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIKILGSHDDYYKILTPHEQIGWVKKDEVK
>Mature_386_residues
GFLFEKSLMGFCIHSIKIVKTIGLILSLLATFLVAENTHDPEEIKAKVVYVKIPQLEDLENNPVYIGQIIGVTYDLLLFD
AEFLEAKIKDGLDKTQIELLSKMPKWKKVEKELFRATYYYKIKGVKASIPPLEVSAFSNKDKYIDYSIAPKVTLQVTDLS
KNPRYANVMAKDLQVLQYKTKDYDDKNNILVVELAFKEANWEDFHIKEALKQGFDNASLNQIKAKEGSVFYYCVLPKTIQ
NLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLFFIFGRKLIFLGLGILCLGFVL
YNLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIKILGSHDDYYKILTPHEQIGWVKKDEVK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44248; Mature: 44117

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFLFEKSLMGFCIHSIKIVKTIGLILSLLATFLVAENTHDPEEIKAKVVYVKIPQLEDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCCC
ENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLSKMPKWKKVEKELFRATYY
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHEEE
YKIKGVKASIPPLEVSAFSNKDKYIDYSIAPKVTLQVTDLSKNPRYANVMAKDLQVLQYK
EEEECCEECCCCEEEEECCCCCCEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHH
TKDYDDKNNILVVELAFKEANWEDFHIKEALKQGFDNASLNQIKAKEGSVFYYCVLPKTI
CCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHEECCCCCEEEEEECCHHH
QNLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLF
HHCCCCEEECCCCEEEEEEEEECCCCCCCCCHHCCCCCCCEEEEECHHHHHHHHHHHHHH
FIFGRKLIFLGLGILCLGFVLYNLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEEECCCCEEEEECCCCCCEE
ILGSHDDYYKILTPHEQIGWVKKDEVK
EECCCCCEEEEECCHHHHCCCCCCCCC
>Mature Secondary Structure 
GFLFEKSLMGFCIHSIKIVKTIGLILSLLATFLVAENTHDPEEIKAKVVYVKIPQLEDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCCC
ENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLSKMPKWKKVEKELFRATYY
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHEEE
YKIKGVKASIPPLEVSAFSNKDKYIDYSIAPKVTLQVTDLSKNPRYANVMAKDLQVLQYK
EEEECCEECCCCEEEEECCCCCCEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHH
TKDYDDKNNILVVELAFKEANWEDFHIKEALKQGFDNASLNQIKAKEGSVFYYCVLPKTI
CCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHEECCCCCEEEEEECCHHH
QNLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLF
HHCCCCEEECCCCEEEEEEEEECCCCCCCCCHHCCCCCCCEEEEECHHHHHHHHHHHHHH
FIFGRKLIFLGLGILCLGFVLYNLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEEECCCCEEEEECCCCCCEE
ILGSHDDYYKILTPHEQIGWVKKDEVK
EECCCCCEEEEECCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA