Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188528063

Identifier: 188528063

GI number: 188528063

Start: 1297391

End: 1299802

Strand: Direct

Name: 188528063

Synonym: HPSH_06600

Alternate gene names: NA

Gene position: 1297391-1299802 (Clockwise)

Preceding gene: 188528062

Following gene: 188528064

Centisome position: 80.66

GC content: 38.68

Gene sequence:

>2412_bases
TTGTGGCTTAAGTCAAAAATCTTTCTTTTAATGGGTGTGAGTTTGCTCTCCCATTCTCTCAACGCTTTAAGCCTCACGCT
CACGCAAGGCAAGGAAGGGGGGGAGGATTTTTCTGTTTTAACCTTACGACACAACAAAGCGTTTTCTTGTTTTTATACTC
ATGAAAAACCACCAAGCGGGATTGAAGCGTCTTTATCCATTATACGCGCTAAACGCCCCATAGAATGCGTGATAGACTCT
ATCCCTAAGGAGGGTTTTACCCCTTTAGAAAACGCTTTTTTCCATATCACCTATTCTATGCGCCAACAACAATTCATTTT
ACACATCAAACCCAAAGTGATGCGAAGGCTCACCCTTTTTTCTTTTGACAGGGATTATAAAAAAGCGATCCCCCTTTTTG
TGGAAAACGATCCTAAAGCCAAAATGTGGCAAATCATAGGCTATGATCAAAATATCCCTTTTTTGAGCGAAAAAAACAAC
GCTCAAAAAGGCTTGAATTTCCCCATTGTCATTAAAGACGCTCAAACCCCTATCATTCAAGAGCTAGATGTGAATAACAA
ACCCCTACTCACCACAAAGGGCTATGACTTAAACGCCTATTTAGAGGCTAAAAAACAAATCAATTCGCAAGCCTATTTTG
ACGCTTTACGAACGATTAGCCGCGCGTTTAAAAACTACCCTCAAACGATTTTTAAAAAAGATTTGTATTTATTAGAAGTT
ATCGCATTAGGCCAATTAGGCATTAAAAAATCCTTACTCATAGACATTGGTGCCAAGTGGATTAAAAATTACCCGACTGA
TCCCAGTATCCCTGAAGTGTTATACTATGTCGCCAAAGCTTTAGACGAAAACAACAATTACAAACAGGCCATGCGCTATT
ACAAACGCATTCTTTTAGAATACAAGAACTCGCGCTACGCTCCTTTAGCCCAAATGCGTTTAGCCATTGAAGCGGCTGAA
GGCTCTGATTTGAGCAACGCTAGCATGCTTTTTAAAGAAGCTTTTTCTAACGCCAAAGACAAAGAGAGCGCGAGTGAGAT
CGCTCTTAATTGGGCTGAAGCAGAGATAAACTATCAAAACTTTAATAACGCTAAATACCTCATTGATAAGGTGGTTCAAT
CCAACCCTGATTATATTTCTAAACACAGCGAATCAGCCCTAGATTTGCTCAAATTATTGAAAAAAAACCAGATGAATGAA
AGCGCGATTGAGATCGCTCACTTGCTCCTTAATCAAGACGATGATGCGAAAGCTAAAGAGCAAGCGCTTTATGATTTAGG
GGCGTTGTATGCAAGGATCAAGGACTTTAAAAACGCCCACCTTTACAATCTGCAATATTTGCAAGATCATGCAGAATTGG
ATAAAGCCTCTGTCGTTAGAGCGCGCGATGAAAAAGCCCTTTTTTCAATGGAGGGGAACACGCAAGAAAAAATCGCCCGC
TATGACAAAATCATCCACAATTTCCCTAATTCTGATGAAGCCCTAAAGGCTTTAGAATTGAAAGCCCAACTCTTGTTTGA
CAACAAGCGTTATACTGAAGTGTTAAACATGCAAAAAAATTTGCCTAAAGATTCTCTTTTGATCCAAAAAACGCTCAATA
TCCTTGCTAAAACCCCATTAGAGGACAATCGTTGTAAAGAAGCCTTAAAATATTTATCCCAGATCACAGCCTTTGAATTC
AGCCCCAAAGAAGAAATCCAAGCCTTTGATTGCTTGTATTTCGCATCGCTCAAAGAAAAAGCACAAATCATTGCCCTAAA
CGCTTTAAAAGCGGCTAAAACCCCTAGCGAGAAATTGGTATGGCTTTATCGTTTGGGGCGCAATTACTACCGCTTAGGGG
ATTTTAAAAATTCCACTCTGACCTCTAAAGACGCTTTAACTCTCGCTCAAAGCTTGGATAAAAAAGAATTTTACGATATT
GCTTTTGTTTTATTTTCAGATTACATGCAAAACAACGAAAAAGAATTGGCCCTCCATTTGTATGCGTTTTTAGAAAAGCA
TTTCAAAGACGATAAACGCATGGCGTTGGTTTATTTTAAATTGCTAGAAAATGAAAAAGATCCTAAAAGCGTCAAAATTT
ATGCCACAAACTTACTCAAACTCCAAGACGCTTATAAGGACTATTCTTACACGCCCTTTAGCGAATTTGCCCTCATTGAC
GCTTACAGAACCACCAAAGACTATTTAAAAGCGCTAGAAACGCTAGACAAACTTTTAAACCGCAGGCTTTCTTTAGAAGA
TCACCAAAAAGCCTTATACTTGCAATCTGGCTTACTGGATCTAACCAATCAAAAAGCAAAATCTAGAGCCAGTTTAGAAA
AATGCGTTCAGTTAAAGCAAAAAGATCAAACAAACGCATGGCAAAATTTATGCGAACAGGGTTTAAATTTATTCAAAAAC
AAGGAGTCATAA

Upstream 100 bases:

>100_bases
ATTTACACCCAAAACGCTACCATGCCCATTTATGCGGTCGTTATTGCCATGGCGTTAGCGTGCTTGTTCTCTGTTTTTAT
GATGCGAGGGCTTTTAGAGT

Downstream 100 bases:

>100_bases
CATGGACATTAGCATTTTTAGAGAATATGATATTAGAGGCATTTACCCCACCACTTTAGATGAAAAGAGCACCTTTAGTA
TCGGCGTGGAGTTAGGGAAA

Product: paralysed flagella protein

Products: NA

Alternate protein names: Flagellar Functional Protein; Paralysed Flagella Protein PflA; Paralysed Flagellum Protein PflA; Tetratricopeptide Tpr_1 Repeat-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Paralyzed Flagella Protein PflA; Tetratricopeptide Repeat Domain Protein

Number of amino acids: Translated: 803; Mature: 803

Protein sequence:

>803_residues
MWLKSKIFLLMGVSLLSHSLNALSLTLTQGKEGGEDFSVLTLRHNKAFSCFYTHEKPPSGIEASLSIIRAKRPIECVIDS
IPKEGFTPLENAFFHITYSMRQQQFILHIKPKVMRRLTLFSFDRDYKKAIPLFVENDPKAKMWQIIGYDQNIPFLSEKNN
AQKGLNFPIVIKDAQTPIIQELDVNNKPLLTTKGYDLNAYLEAKKQINSQAYFDALRTISRAFKNYPQTIFKKDLYLLEV
IALGQLGIKKSLLIDIGAKWIKNYPTDPSIPEVLYYVAKALDENNNYKQAMRYYKRILLEYKNSRYAPLAQMRLAIEAAE
GSDLSNASMLFKEAFSNAKDKESASEIALNWAEAEINYQNFNNAKYLIDKVVQSNPDYISKHSESALDLLKLLKKNQMNE
SAIEIAHLLLNQDDDAKAKEQALYDLGALYARIKDFKNAHLYNLQYLQDHAELDKASVVRARDEKALFSMEGNTQEKIAR
YDKIIHNFPNSDEALKALELKAQLLFDNKRYTEVLNMQKNLPKDSLLIQKTLNILAKTPLEDNRCKEALKYLSQITAFEF
SPKEEIQAFDCLYFASLKEKAQIIALNALKAAKTPSEKLVWLYRLGRNYYRLGDFKNSTLTSKDALTLAQSLDKKEFYDI
AFVLFSDYMQNNEKELALHLYAFLEKHFKDDKRMALVYFKLLENEKDPKSVKIYATNLLKLQDAYKDYSYTPFSEFALID
AYRTTKDYLKALETLDKLLNRRLSLEDHQKALYLQSGLLDLTNQKAKSRASLEKCVQLKQKDQTNAWQNLCEQGLNLFKN
KES

Sequences:

>Translated_803_residues
MWLKSKIFLLMGVSLLSHSLNALSLTLTQGKEGGEDFSVLTLRHNKAFSCFYTHEKPPSGIEASLSIIRAKRPIECVIDS
IPKEGFTPLENAFFHITYSMRQQQFILHIKPKVMRRLTLFSFDRDYKKAIPLFVENDPKAKMWQIIGYDQNIPFLSEKNN
AQKGLNFPIVIKDAQTPIIQELDVNNKPLLTTKGYDLNAYLEAKKQINSQAYFDALRTISRAFKNYPQTIFKKDLYLLEV
IALGQLGIKKSLLIDIGAKWIKNYPTDPSIPEVLYYVAKALDENNNYKQAMRYYKRILLEYKNSRYAPLAQMRLAIEAAE
GSDLSNASMLFKEAFSNAKDKESASEIALNWAEAEINYQNFNNAKYLIDKVVQSNPDYISKHSESALDLLKLLKKNQMNE
SAIEIAHLLLNQDDDAKAKEQALYDLGALYARIKDFKNAHLYNLQYLQDHAELDKASVVRARDEKALFSMEGNTQEKIAR
YDKIIHNFPNSDEALKALELKAQLLFDNKRYTEVLNMQKNLPKDSLLIQKTLNILAKTPLEDNRCKEALKYLSQITAFEF
SPKEEIQAFDCLYFASLKEKAQIIALNALKAAKTPSEKLVWLYRLGRNYYRLGDFKNSTLTSKDALTLAQSLDKKEFYDI
AFVLFSDYMQNNEKELALHLYAFLEKHFKDDKRMALVYFKLLENEKDPKSVKIYATNLLKLQDAYKDYSYTPFSEFALID
AYRTTKDYLKALETLDKLLNRRLSLEDHQKALYLQSGLLDLTNQKAKSRASLEKCVQLKQKDQTNAWQNLCEQGLNLFKN
KES
>Mature_803_residues
MWLKSKIFLLMGVSLLSHSLNALSLTLTQGKEGGEDFSVLTLRHNKAFSCFYTHEKPPSGIEASLSIIRAKRPIECVIDS
IPKEGFTPLENAFFHITYSMRQQQFILHIKPKVMRRLTLFSFDRDYKKAIPLFVENDPKAKMWQIIGYDQNIPFLSEKNN
AQKGLNFPIVIKDAQTPIIQELDVNNKPLLTTKGYDLNAYLEAKKQINSQAYFDALRTISRAFKNYPQTIFKKDLYLLEV
IALGQLGIKKSLLIDIGAKWIKNYPTDPSIPEVLYYVAKALDENNNYKQAMRYYKRILLEYKNSRYAPLAQMRLAIEAAE
GSDLSNASMLFKEAFSNAKDKESASEIALNWAEAEINYQNFNNAKYLIDKVVQSNPDYISKHSESALDLLKLLKKNQMNE
SAIEIAHLLLNQDDDAKAKEQALYDLGALYARIKDFKNAHLYNLQYLQDHAELDKASVVRARDEKALFSMEGNTQEKIAR
YDKIIHNFPNSDEALKALELKAQLLFDNKRYTEVLNMQKNLPKDSLLIQKTLNILAKTPLEDNRCKEALKYLSQITAFEF
SPKEEIQAFDCLYFASLKEKAQIIALNALKAAKTPSEKLVWLYRLGRNYYRLGDFKNSTLTSKDALTLAQSLDKKEFYDI
AFVLFSDYMQNNEKELALHLYAFLEKHFKDDKRMALVYFKLLENEKDPKSVKIYATNLLKLQDAYKDYSYTPFSEFALID
AYRTTKDYLKALETLDKLLNRRLSLEDHQKALYLQSGLLDLTNQKAKSRASLEKCVQLKQKDQTNAWQNLCEQGLNLFKN
KES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 92710; Mature: 92710

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWLKSKIFLLMGVSLLSHSLNALSLTLTQGKEGGEDFSVLTLRHNKAFSCFYTHEKPPSG
CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCC
IEASLSIIRAKRPIECVIDSIPKEGFTPLENAFFHITYSMRQQQFILHIKPKVMRRLTLF
HHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCEEEEEEECCCCEEEEEECHHHHHHHHHH
SFDRDYKKAIPLFVENDPKAKMWQIIGYDQNIPFLSEKNNAQKGLNFPIVIKDAQTPIIQ
HCCCCHHHHCCEEECCCCCCHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH
ELDVNNKPLLTTKGYDLNAYLEAKKQINSQAYFDALRTISRAFKNYPQTIFKKDLYLLEV
HCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IALGQLGIKKSLLIDIGAKWIKNYPTDPSIPEVLYYVAKALDENNNYKQAMRYYKRILLE
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
YKNSRYAPLAQMRLAIEAAEGSDLSNASMLFKEAFSNAKDKESASEIALNWAEAEINYQN
HCCCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHEEHHHEEEECCC
FNNAKYLIDKVVQSNPDYISKHSESALDLLKLLKKNQMNESAIEIAHLLLNQDDDAKAKE
CCCHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH
QALYDLGALYARIKDFKNAHLYNLQYLQDHAELDKASVVRARDEKALFSMEGNTQEKIAR
HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCHHHHHHHCCCHHEEEECCCCHHHHHH
YDKIIHNFPNSDEALKALELKAQLLFDNKRYTEVLNMQKNLPKDSLLIQKTLNILAKTPL
HHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
EDNRCKEALKYLSQITAFEFSPKEEIQAFDCLYFASLKEKAQIIALNALKAAKTPSEKLV
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCHHHHH
WLYRLGRNYYRLGDFKNSTLTSKDALTLAQSLDKKEFYDIAFVLFSDYMQNNEKELALHL
HHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
YAFLEKHFKDDKRMALVYFKLLENEKDPKSVKIYATNLLKLQDAYKDYSYTPFSEFALID
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHH
AYRTTKDYLKALETLDKLLNRRLSLEDHQKALYLQSGLLDLTNQKAKSRASLEKCVQLKQ
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
KDQTNAWQNLCEQGLNLFKNKES
CCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MWLKSKIFLLMGVSLLSHSLNALSLTLTQGKEGGEDFSVLTLRHNKAFSCFYTHEKPPSG
CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCC
IEASLSIIRAKRPIECVIDSIPKEGFTPLENAFFHITYSMRQQQFILHIKPKVMRRLTLF
HHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCEEEEEEECCCCEEEEEECHHHHHHHHHH
SFDRDYKKAIPLFVENDPKAKMWQIIGYDQNIPFLSEKNNAQKGLNFPIVIKDAQTPIIQ
HCCCCHHHHCCEEECCCCCCHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH
ELDVNNKPLLTTKGYDLNAYLEAKKQINSQAYFDALRTISRAFKNYPQTIFKKDLYLLEV
HCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IALGQLGIKKSLLIDIGAKWIKNYPTDPSIPEVLYYVAKALDENNNYKQAMRYYKRILLE
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
YKNSRYAPLAQMRLAIEAAEGSDLSNASMLFKEAFSNAKDKESASEIALNWAEAEINYQN
HCCCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHEEHHHEEEECCC
FNNAKYLIDKVVQSNPDYISKHSESALDLLKLLKKNQMNESAIEIAHLLLNQDDDAKAKE
CCCHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH
QALYDLGALYARIKDFKNAHLYNLQYLQDHAELDKASVVRARDEKALFSMEGNTQEKIAR
HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCHHHHHHHCCCHHEEEECCCCHHHHHH
YDKIIHNFPNSDEALKALELKAQLLFDNKRYTEVLNMQKNLPKDSLLIQKTLNILAKTPL
HHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
EDNRCKEALKYLSQITAFEFSPKEEIQAFDCLYFASLKEKAQIIALNALKAAKTPSEKLV
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCHHHHH
WLYRLGRNYYRLGDFKNSTLTSKDALTLAQSLDKKEFYDIAFVLFSDYMQNNEKELALHL
HHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
YAFLEKHFKDDKRMALVYFKLLENEKDPKSVKIYATNLLKLQDAYKDYSYTPFSEFALID
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHH
AYRTTKDYLKALETLDKLLNRRLSLEDHQKALYLQSGLLDLTNQKAKSRASLEKCVQLKQ
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
KDQTNAWQNLCEQGLNLFKNKES
CCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA