| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528028
Identifier: 188528028
GI number: 188528028
Start: 1263325
End: 1263897
Strand: Reverse
Name: 188528028
Synonym: HPSH_06415
Alternate gene names: NA
Gene position: 1263897-1263325 (Counterclockwise)
Preceding gene: 188528029
Following gene: 188528027
Centisome position: 78.57
GC content: 42.06
Gene sequence:
>573_bases ATGGAGCTTATTTTAGGCTCTCAATCTAGCGCTAGGGCGAATCTTTTAAAAGAGCATGGGATTGAGTTTGAACAAAAAGC GCTCTATTTTGATGAAGAAAGCCTAAAAACCACAGACCCTAGGGAGTTTGTCTATTTAGCGTGCAAGGGGAAATTAGAAA AAGCTAAAGAATTGCTCGCAAACAACCGCACTATCGTGGTGGCTGATAGCGTGGTGAGCGTGGGTAATCGCATGCAACGA AAAGCTAAAAACAGACAAGAAGCCTTTGAATTTTTAAAACGCCAAAATGGTCATGAAATAGAGGTTTTAACCTGCTCTGC ATTGATTTCTCCCGCATTAGAATGGCTGGATCTATCGGTTTTTAGAGCGCGTTTAAAGGCGTTTGATCCTAGCGAGATGG AAAAATATTTAGAGAGCGGTTTGTGGCAAGAAAGCGCGGGCTGTGTGCGTTTAGAGGATTTTCATAAGCCCTATATTAAA AGCTTAAGCGAGAATTTAAGCGTGGGGTTGGGGCTGAATGTGGAAGGCTTGTTAGGGGTGCTAAAATTAGGGGCTAAACT TTCATCATTATAA
Upstream 100 bases:
>100_bases AGAGGCGATTTTGCGAGCGCTGGAGGCAGGGATATTGAAAATTTGCAAGCCGCGCTCAATTTGGCGAAAAATACCGCTCT TAAAGCTTTAGAGGGATAAC
Downstream 100 bases:
>100_bases ACGCTATTATTTAATATTTATTCTATAAAATATTCAATAATACTATTTTTTAGCTAGCCACCCCCTTGACAAGCAAAAAA AACGATACACTCCAGCATTT
Product: Maf-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 190; Mature: 190
Protein sequence:
>190_residues MELILGSQSSARANLLKEHGIEFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLANNRTIVVADSVVSVGNRMQR KAKNRQEAFEFLKRQNGHEIEVLTCSALISPALEWLDLSVFRARLKAFDPSEMEKYLESGLWQESAGCVRLEDFHKPYIK SLSENLSVGLGLNVEGLLGVLKLGAKLSSL
Sequences:
>Translated_190_residues MELILGSQSSARANLLKEHGIEFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLANNRTIVVADSVVSVGNRMQR KAKNRQEAFEFLKRQNGHEIEVLTCSALISPALEWLDLSVFRARLKAFDPSEMEKYLESGLWQESAGCVRLEDFHKPYIK SLSENLSVGLGLNVEGLLGVLKLGAKLSSL >Mature_190_residues MELILGSQSSARANLLKEHGIEFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLANNRTIVVADSVVSVGNRMQR KAKNRQEAFEFLKRQNGHEIEVLTCSALISPALEWLDLSVFRARLKAFDPSEMEKYLESGLWQESAGCVRLEDFHKPYIK SLSENLSVGLGLNVEGLLGVLKLGAKLSSL
Specific function: Unknown
COG id: COG0424
COG function: function code D; Nucleotide-binding protein implicated in inhibition of septum formation
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the maf family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003697 [H]
Pfam domain/function: PF02545 Maf [H]
EC number: NA
Molecular weight: Translated: 21319; Mature: 21319
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELILGSQSSARANLLKEHGIEFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLA CCEEECCCCHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCEEEEEECCCHHHHHHHHH NNRTIVVADSVVSVGNRMQRKAKNRQEAFEFLKRQNGHEIEVLTCSALISPALEWLDLSV CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH FRARLKAFDPSEMEKYLESGLWQESAGCVRLEDFHKPYIKSLSENLSVGLGLNVEGLLGV HHHHHHCCCHHHHHHHHHHCCCCCCCCEEEHHHHCCHHHHHHHHHCCCCCCCCHHHHHHH LKLGAKLSSL HHHHHHHCCC >Mature Secondary Structure MELILGSQSSARANLLKEHGIEFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLA CCEEECCCCHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCEEEEEECCCHHHHHHHHH NNRTIVVADSVVSVGNRMQRKAKNRQEAFEFLKRQNGHEIEVLTCSALISPALEWLDLSV CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH FRARLKAFDPSEMEKYLESGLWQESAGCVRLEDFHKPYIKSLSENLSVGLGLNVEGLLGV HHHHHHCCCHHHHHHHHHHCCCCCCCCEEEHHHHCCHHHHHHHHHCCCCCCCCHHHHHHH LKLGAKLSSL HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]