| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528002
Identifier: 188528002
GI number: 188528002
Start: 1240437
End: 1241141
Strand: Reverse
Name: 188528002
Synonym: HPSH_06285
Alternate gene names: NA
Gene position: 1241141-1240437 (Counterclockwise)
Preceding gene: 188528003
Following gene: 188528001
Centisome position: 77.16
GC content: 38.16
Gene sequence:
>705_bases TTGAATACTGACTTTAGCCATATCACCGATATAGAGGGCATGCGTTTTATCAATGAAGAAGACGCTTTGAACAAATTGAT TAATGAGATCCACACGCGCCACATTGATTTAAAAGATTCCATCATGCTCGCTTTGAGTTTTAACGCTCTGTATTTAGCTA ACGCTTTAGCGCAAAAATTTGGAGCGACTTATGATATACTTTTTTTAGAACCTATCCTAGCCCCTTTAAACTCAAAATGC GAGATCGCTTTGGTGAGTGAGAGCATGGATATAGTGATGAATGAAAGTTTGATCAATTCCTTTGACATCACTTTAGACTA TGTTTATGGAGAAGCCAAGCGAGCTTATGAAGAAGACATTTTGTCCTACATCTATCAGTATCGCAAAGGCAATGCGATCA AAAGCTTAAAAGATAAAAATATTTTTATCGTAGATAGGGGGATTGAAACCGGGTTTAGAGCAGGATTGGGCGTGCAAACT TGCTTGAAAAAAGAATGCCAAGACATTTATATTTTAACCCCCATTGTCGCGCAAAATGTCGCTCAAGGCTTAGAAAGTTT ATGCGATGGGGTGATTAGCGTGTATCGCCCTGAATGTTTTGTCTCTGTGGAGCATCATTATAAAGAACTCAAGCGATTAA GCAATGAAGAAATTGAAAAATACTTGGGCGCCAACAACGCGCCTAATTTAAAAAAGGAACATTAA
Upstream 100 bases:
>100_bases TTGAAAATAACTATGTTAAGCTAGAATTAGACTTTTCACCGATCACTAAAACCAATGTAACTTACCGCTCTTTACAGCGT AAGTAAAAAAAGGAATGCAT
Downstream 100 bases:
>100_bases ATATGGATTTTATCACCATCACTTCTAGTAACAAAACCGAAGAGTTCGCTCTCAAACAAGTGGCCAAACAAGCCACCAGC TCTCTTATGTATCGCTTAGG
Product: hypothetical protein
Products: NA
Alternate protein names: Na+/H+ Antiporter; Phosphoribosyl Transferase Domain Protein; Phosphoglycerate Dehydrogenase
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLANALAQKFGATYDILFLEPILAPLNSKC EIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDILSYIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQT CLKKECQDIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEIEKYLGANNAPNLKKEH
Sequences:
>Translated_234_residues MNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLANALAQKFGATYDILFLEPILAPLNSKC EIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDILSYIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQT CLKKECQDIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEIEKYLGANNAPNLKKEH >Mature_234_residues MNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLANALAQKFGATYDILFLEPILAPLNSKC EIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDILSYIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQT CLKKECQDIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEIEKYLGANNAPNLKKEH
Specific function: Unknown
COG id: COG1926
COG function: function code R; Predicted phosphoribosyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26611; Mature: 26611
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLANALAQKF CCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHHHHHHHHHH GATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDI CCCEEHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH LSYIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPIVAQNV HHHHHHHHCCCHHHHHCCCCEEEEECCCCHHHHCCCCHHHHHHHHCCCEEEEHHHHHHHH AQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEIEKYLGANNAPNLKKEH HHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLANALAQKF CCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHHHHHHHHHH GATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDI CCCEEHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH LSYIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPIVAQNV HHHHHHHHCCCHHHHHCCCCEEEEECCCCHHHHCCCCHHHHHHHHCCCEEEEHHHHHHHH AQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEIEKYLGANNAPNLKKEH HHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA