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The map label for this gene is rimM

Identifier: 188527933

GI number: 188527933

Start: 1164489

End: 1165043

Strand: Reverse

Name: rimM

Synonym: HPSH_05930

Alternate gene names: 188527933

Gene position: 1165043-1164489 (Counterclockwise)

Preceding gene: 188527934

Following gene: 188527932

Centisome position: 72.43

GC content: 36.22

Gene sequence:

>555_bases
ATGGTTTCTATGCTTTTAGTGGGCAGAATTGGTAAAAGCGTGGGGCTTAATGGGGGGTTAAGGCTTCATTTAGAGAGCGA
TTTTCCGGAGTGTTTAAAAAAAGGCGTTAAGGTGAGTGTCGCTCCCTTGAATGCTTTCTTTTGCACTTCTTCTTTTAAAG
GATATACAATCCATTCTTATGAACATGCTAAAAACCTGTTGTTTTTAGAAACTATCCACACACCTGAAAAAGCTAAAGAG
CTGACTAATTTAGGGCTTTTTATGAGCGAAGCAGAGAGTAAAAAACTCTGCGTTTTAAAAGATGGGGAGTTTTTTTATTG
CGATTTAGTAGGGCTTAGCGTGGTGGAAGAAAACGAGACTTTAGGGAAAGTCGTAGAAATCCAAAGGATTTCTCAAATAG
ATTATTTCATGGTTGAAACCGCAAGAAGTTTGGTTGAAAAAGGTTTGGCTAAGATTTTTTTAATCCCTTATAGGGATTTT
TATATCAAAGAAATCCTTTTGCAAGACAAAAAAATAACCACCAATAACGCTAAAACGCTTTTAGAGAATAGTTGA

Upstream 100 bases:

>100_bases
TGGCGTGAAAGCCAAAGATGGGTTTTCTTGTAAAATCGTTGTTTTTGCTAGTAAAAATGGCGATAAAAATCCCCATGTTT
TAGGCGATCAAACGCCTTGA

Downstream 100 bases:

>100_bases
GTGAAATTCAGCGTTTTAACCCTTTTCCCGCAACTCGTTTTACCCTATTTTGAGGACTCCATTTTAAAAAGAGCGTTAGA
AAAAAATCTTTTTGAATTAG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MVSMLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFFCTSSFKGYTIHSYEHAKNLLFLETIHTPEKAKE
LTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVEENETLGKVVEIQRISQIDYFMVETARSLVEKGLAKIFLIPYRDF
YIKEILLQDKKITTNNAKTLLENS

Sequences:

>Translated_184_residues
MVSMLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFFCTSSFKGYTIHSYEHAKNLLFLETIHTPEKAKE
LTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVEENETLGKVVEIQRISQIDYFMVETARSLVEKGLAKIFLIPYRDF
YIKEILLQDKKITTNNAKTLLENS
>Mature_184_residues
MVSMLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFFCTSSFKGYTIHSYEHAKNLLFLETIHTPEKAKE
LTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVEENETLGKVVEIQRISQIDYFMVETARSLVEKGLAKIFLIPYRDF
YIKEILLQDKKITTNNAKTLLENS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_HELPS (B2UUQ8)

Other databases:

- EMBL:   CP001072
- RefSeq:   YP_001910620.1
- GeneID:   6297175
- GenomeReviews:   CP001072_GR
- KEGG:   hps:HPSH_05930
- HOGENOM:   HBG703775
- OMA:   LESDFPE
- ProtClustDB:   PRK14593
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20733; Mature: 20733

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSMLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFFCTSSFKGYTIHSY
CCEEEEEECCCHHCCCCCCEEEEECCCCHHHHHCCCEEEEEECEEEEECCCCCCCEEECH
EHAKNLLFLETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVEENET
HHHCCEEEEEECCCCHHHHHHHHHHHHEECCCCCCEEEEECCCEEEEEEECEEEEECCCH
LGKVVEIQRISQIDYFMVETARSLVEKGLAKIFLIPYRDFYIKEILLQDKKITTNNAKTL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECHHHHHHHHHHCCCEEECCCCHHH
LENS
CCCC
>Mature Secondary Structure
MVSMLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFFCTSSFKGYTIHSY
CCEEEEEECCCHHCCCCCCEEEEECCCCHHHHHCCCEEEEEECEEEEECCCCCCCEEECH
EHAKNLLFLETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVEENET
HHHCCEEEEEECCCCHHHHHHHHHHHHEECCCCCCEEEEECCCEEEEEEECEEEEECCCH
LGKVVEIQRISQIDYFMVETARSLVEKGLAKIFLIPYRDFYIKEILLQDKKITTNNAKTL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECHHHHHHHHHHCCCEEECCCCHHH
LENS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA