Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527841

Identifier: 188527841

GI number: 188527841

Start: 1073953

End: 1074711

Strand: Direct

Name: 188527841

Synonym: HPSH_05435

Alternate gene names: NA

Gene position: 1073953-1074711 (Clockwise)

Preceding gene: 188527840

Following gene: 188527842

Centisome position: 66.77

GC content: 35.44

Gene sequence:

>759_bases
ATGCTAGAATCTTATGCGCTTGAAAGTGGGGCTGTTTTTATCTCTGATGCGCATTTTTTGCCTAAAAGCCCTCATTTAAT
CAATACGCTTAAAGAACTTTTAAACGCCAAACCTCCACAAGTCTTTTTCATGGGCGATATTTTCCATGTTCTTGTGGGCT
ATTTACCCCTAGATAAAGAGCAGCAAAAAATCATTGATCTAATCCATGCTTTAAGCGAAATTTCACAAGTCTTTTATTTT
GAAGGCAATCATGATTTTTCCATGCGTTTTGTATTCAATTCTAAAGTGGTGGTTTTTGAGCGCCAAAACCAGCCCGTATT
ATTCCAACATGATAACAAACGCTTTTTACTAGCCCATGGGGATTTATTCATCACTAAAGCGTATGAATTTTACATCACGC
AACTCACTTCCACTTGGGCCAGATTTTTTTTAACTTTTTTAAATTTATTAAGTTTTAAAACCTTATACCCCATTTTTAAA
AAACTCATCTATCAAAAACCCATCCGCCTTTGGGAATTAGAATCAAAAGAATTGCAATCTTTTATTGAAAAGCGCCTAAA
AGCCTATCAAAACTACATTAAAAATCTTAACATTGGTAGCATTGACGGCATTATAGAGGGGCATTTTCATCTCAAAAGCG
ACACAAAAATCCCCTTGAATGCGCCTATTTATTGCCCACTGCCTTCCTTTTATTACGAACAAAGCCTTTTTAAGGTATCA
TCAAGCATTTTAGAACCATCTCAAAATAAGGACGCCTAA

Upstream 100 bases:

>100_bases
GCGAGCGTTCTTTCAATGGGCATGAGTGATGATTTTGAATTAGCGATTGCTTGCGGGGCGAATCTTTTAAGGATTGGCTC
TTTTTTGTTCAAAGAGTAAG

Downstream 100 bases:

>100_bases
ATCATGGCAGAAAAAACAGCTAACGATTTAAAATTGAGCGAGATAGAACTCGTGGATTTTCGCATTTATGGCATGCAAGA
GGGCGTCCCTTATGAGGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: UDP-2 3-Diacylglucosamine Hydrolase; Pyridine Nucleotide-Disulfide Oxidoreductase YkgC

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MLESYALESGAVFISDAHFLPKSPHLINTLKELLNAKPPQVFFMGDIFHVLVGYLPLDKEQQKIIDLIHALSEISQVFYF
EGNHDFSMRFVFNSKVVVFERQNQPVLFQHDNKRFLLAHGDLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPIFK
KLIYQKPIRLWELESKELQSFIEKRLKAYQNYIKNLNIGSIDGIIEGHFHLKSDTKIPLNAPIYCPLPSFYYEQSLFKVS
SSILEPSQNKDA

Sequences:

>Translated_252_residues
MLESYALESGAVFISDAHFLPKSPHLINTLKELLNAKPPQVFFMGDIFHVLVGYLPLDKEQQKIIDLIHALSEISQVFYF
EGNHDFSMRFVFNSKVVVFERQNQPVLFQHDNKRFLLAHGDLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPIFK
KLIYQKPIRLWELESKELQSFIEKRLKAYQNYIKNLNIGSIDGIIEGHFHLKSDTKIPLNAPIYCPLPSFYYEQSLFKVS
SSILEPSQNKDA
>Mature_252_residues
MLESYALESGAVFISDAHFLPKSPHLINTLKELLNAKPPQVFFMGDIFHVLVGYLPLDKEQQKIIDLIHALSEISQVFYF
EGNHDFSMRFVFNSKVVVFERQNQPVLFQHDNKRFLLAHGDLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPIFK
KLIYQKPIRLWELESKELQSFIEKRLKAYQNYIKNLNIGSIDGIIEGHFHLKSDTKIPLNAPIYCPLPSFYYEQSLFKVS
SSILEPSQNKDA

Specific function: Unknown

COG id: COG2908

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29488; Mature: 29488

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESYALESGAVFISDAHFLPKSPHLINTLKELLNAKPPQVFFMGDIFHVLVGYLPLDKE
CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCHH
QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVVVFERQNQPVLFQHDNKRFLLAHG
HHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCEEEEEECCCCCEEEEECCCEEEEEEC
DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPIFKKLIYQKPIRLWELESKELQS
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHH
FIEKRLKAYQNYIKNLNIGSIDGIIEGHFHLKSDTKIPLNAPIYCPLPSFYYEQSLFKVS
HHHHHHHHHHHHHHCCCCCCCCCEEECEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHH
SSILEPSQNKDA
HHHCCCCCCCCC
>Mature Secondary Structure
MLESYALESGAVFISDAHFLPKSPHLINTLKELLNAKPPQVFFMGDIFHVLVGYLPLDKE
CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCHH
QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVVVFERQNQPVLFQHDNKRFLLAHG
HHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCEEEEEECCCCCEEEEECCCEEEEEEC
DLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPIFKKLIYQKPIRLWELESKELQS
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHH
FIEKRLKAYQNYIKNLNIGSIDGIIEGHFHLKSDTKIPLNAPIYCPLPSFYYEQSLFKVS
HHHHHHHHHHHHHHCCCCCCCCCEEECEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHH
SSILEPSQNKDA
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA