Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 188527840

GI number: 188527840

Start: 1073283

End: 1073951

Strand: Direct

Name: yggS [C]

Synonym: HPSH_05430

Alternate gene names: 188527840

Gene position: 1073283-1073951 (Clockwise)

Preceding gene: 188527839

Following gene: 188527841

Centisome position: 66.72

GC content: 37.52

Gene sequence:

>669_bases
ATGACAGATTATAGCCAAAGGATTGATACCCTCATCGCAAAAATAGAAAAGGCTCGCACCGCCTATTCAAGGCACCACAT
TGTAAAAATCGTGGCTGTTTCAAAAAACGCTTCCTTAGAAGCCATTCAAAATTACTATAACTGCTCTCAAAGGGCTTTTG
GAGAAAATAAAGTCCAAGATTTAAAAATTAAAATGCATTCTTTAGAGCATTTACCCCTTGAATGGCACATGATAGGCTCT
TTACAAGAGAATAAAATCAATGCACTTTTGAGTTTAAAACTCGCTCTTTTGCATTCTTTAGACTCCTTAAAACTCGCTTT
GAAAATAGAAAAGCGTTGCGAAATATTGGGCGTCAATTTAAACGCTCTTTTACAGGTTAATAGCGCGTATGAGGAAAGTA
AAAGCGGGGTGATGCCTGAAGAAACGCTAGAAATTTATTCTCAAATCAGTGAAACTTGCAAGCGCCTCAAACTTAAGGGG
CTTATGTGTATAGGGGCTCATGCTGATGATGAAAAGGAAATTGAAAAATCCTTTATTACCACCAAAAAGCTTTTTGACCG
ATTAAAGAATGCGAGCGTTCTTTCAATGGGCATGAGTGATGATTTTGAATTAGCGATTGCTTGCGGGGCGAATCTTTTAA
GGATTGGCTCTTTTTTGTTCAAAGAGTAA

Upstream 100 bases:

>100_bases
GAAAAAGAAAGGGCTTTTAAAAGATTTTGAAACTTTAAATCAAAAATTCCATCTCACGCATTCTTTTAGCACGCATAAAG
AAGATCTATAAAGAAGAATT

Downstream 100 bases:

>100_bases
GATGCTAGAATCTTATGCGCTTGAAAGTGGGGCTGTTTTTATCTCTGATGCGCATTTTTTGCCTAAAAGCCCTCATTTAA
TCAATACGCTTAAAGAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTDYSQRIDTLIAKIEKARTAYSRHHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGS
LQENKINALLSLKLALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKG
LMCIGAHADDEKEIEKSFITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE

Sequences:

>Translated_222_residues
MTDYSQRIDTLIAKIEKARTAYSRHHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGS
LQENKINALLSLKLALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKG
LMCIGAHADDEKEIEKSFITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE
>Mature_221_residues
TDYSQRIDTLIAKIEKARTAYSRHHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGSL
QENKINALLSLKLALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGL
MCIGAHADDEKEIEKSFITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=209, Percent_Identity=35.8851674641148, Blast_Score=112, Evalue=3e-25,
Organism=Escherichia coli, GI1789321, Length=231, Percent_Identity=34.6320346320346, Blast_Score=115, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17533025, Length=224, Percent_Identity=35.7142857142857, Blast_Score=107, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=206, Percent_Identity=36.4077669902913, Blast_Score=93, Evalue=3e-20,
Organism=Drosophila melanogaster, GI45550861, Length=208, Percent_Identity=35.0961538461538, Blast_Score=115, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25059; Mature: 24927

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDYSQRIDTLIAKIEKARTAYSRHHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQD
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH
LKIKMHSLEHLPLEWHMIGSLQENKINALLSLKLALLHSLDSLKLALKIEKRCEILGVNL
HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCH
NALLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFIT
HHEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHH
TKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE
HHHHHHHHCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHCC
>Mature Secondary Structure 
TDYSQRIDTLIAKIEKARTAYSRHHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQD
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH
LKIKMHSLEHLPLEWHMIGSLQENKINALLSLKLALLHSLDSLKLALKIEKRCEILGVNL
HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCH
NALLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFIT
HHEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHH
TKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE
HHHHHHHHCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]