| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527816
Identifier: 188527816
GI number: 188527816
Start: 1044507
End: 1045676
Strand: Reverse
Name: 188527816
Synonym: HPSH_05305
Alternate gene names: NA
Gene position: 1045676-1044507 (Counterclockwise)
Preceding gene: 188527817
Following gene: 188527815
Centisome position: 65.01
GC content: 36.84
Gene sequence:
>1170_bases ATGGTTATTGTTTTAGTCGTGGATAGCTTTAAAGATACTAGTAATGGCACTTCTATGACGGCGTTTCGTTTTTTTGAAAC GCTGAAAAAAAGAGGGCATGTTATGAGGGTGGTTGCCCCTTATGTGGATAATTTAGGGAGTGAAGAAGAGGGGTATTACA ACCTTAAAGAGCGCTATATCCCCCTAGTTACAGAAATTTCACACAAACAACACATTCTTTTTGCTAAACCCGATGAAAAA ATCTTAAGAAAGGCTTTTAAGGGAGCGGATATGATCCATACTTATTTGCCTTTTTTGCTAGAAAAAACAGCCGTAAAAAT CGCGCGAGAAATGCAAGTGCCTTATATTGGCTCTTTCCATTTACAGCCAGAGCATATTTCTTATAACATGAAATTGGGGT GGTTTTCTTGGTTTAACATGATGCTTTTTTCGTGGTTTAAATCTTCGCATTACCGCTATATCCATCATATCCATTGCCCA TCAAAATTCATTGTAGAAGAATTAGAAAAATACAACTATGGAGGGAAAAAATACGCTATTTCTAACGGCTTTGATCCCAT GTTTAGATTTGAACACCCGCAAAAAAGCCTTTTTGACACCACACCCTTTAAAATCGCTATGGTAGGGCGCTATTCTAATG AAAAAAATCAAAGCGTTTTAATCAAAGCGGTTGCTTTAAGCAAATACAAACAAGATATTGTATTATTGCTCAAAGGTAAA GGGCCTGATGAGAAAAAAATCAAACTTTTAGCCCAAAAACTAGGCGTAAAAACGGAGTTTGGGTTTGTCAATTCCAATGA ATTGTTAGAGATTTTAAAAACTTGCACCCTCTATGCGCACACAGCCAATGTGGAAAGCGAAGCGATTGCGTGTTTAGAAG CTATTAGCGTGGGGATTGTGCCTATTATCGCCAATAGCCCTTTAAGCGCGACCAGGCAATTTGCACTAGATGAACGATCG CTATTTGAGCCTAATAACGCTAAAGATTTGAGCGCTAAAATAGACTGGTGGTTAGAAAACAAGCTTGAAAGAGAAAGGAT GCAAAATAAATACGCTAAAAGCGCTTTAAACTACACTTTAGAAAATTCAGTCATTCAAATTGAAAAAGTTTATGAAGAAG CGATCAAAGATTTTAAAAATAACCCCAGTCTTTTTAAAACCTTATCGTAA
Upstream 100 bases:
>100_bases AGAGGCGTTTGTGTTAGACATTCAGGTTTTAGAGGGACTGATAGAAATCGTGGTGTTTGATAAAAAGCCTTTCAAATTCA ATTTTAAAGAAGAGTAGTTA
Downstream 100 bases:
>100_bases CAAAAGGATAAAAAATGCAAGAAGTCCATGATTATGGGATTAATTTTTGGAGCAATAACGAATTTAAGATAGAAAAAGGC TTGGTTAAAGTTTGCCATGG
Product: type 1 capsular polysaccharide biosynthesis protein J
Products: NA
Alternate protein names: Glycosyl Transferase; Group 1 Glycosyl Transferase; Type 1 Capsular Polysaccharide Biosynthesis Protein J; Cholesterol Alpha-Glucosyltransferase; 1 2-Diacylglycerol 3-Glucosyltransferase; Type 1 Capsular Polysaccharide Biosynthesis Protein; Glucosyltransferase; Lipopolysaccharide Biosynthesis Protein
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MVIVLVVDSFKDTSNGTSMTAFRFFETLKKRGHVMRVVAPYVDNLGSEEEGYYNLKERYIPLVTEISHKQHILFAKPDEK ILRKAFKGADMIHTYLPFLLEKTAVKIAREMQVPYIGSFHLQPEHISYNMKLGWFSWFNMMLFSWFKSSHYRYIHHIHCP SKFIVEELEKYNYGGKKYAISNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGK GPDEKKIKLLAQKLGVKTEFGFVNSNELLEILKTCTLYAHTANVESEAIACLEAISVGIVPIIANSPLSATRQFALDERS LFEPNNAKDLSAKIDWWLENKLERERMQNKYAKSALNYTLENSVIQIEKVYEEAIKDFKNNPSLFKTLS
Sequences:
>Translated_389_residues MVIVLVVDSFKDTSNGTSMTAFRFFETLKKRGHVMRVVAPYVDNLGSEEEGYYNLKERYIPLVTEISHKQHILFAKPDEK ILRKAFKGADMIHTYLPFLLEKTAVKIAREMQVPYIGSFHLQPEHISYNMKLGWFSWFNMMLFSWFKSSHYRYIHHIHCP SKFIVEELEKYNYGGKKYAISNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGK GPDEKKIKLLAQKLGVKTEFGFVNSNELLEILKTCTLYAHTANVESEAIACLEAISVGIVPIIANSPLSATRQFALDERS LFEPNNAKDLSAKIDWWLENKLERERMQNKYAKSALNYTLENSVIQIEKVYEEAIKDFKNNPSLFKTLS >Mature_389_residues MVIVLVVDSFKDTSNGTSMTAFRFFETLKKRGHVMRVVAPYVDNLGSEEEGYYNLKERYIPLVTEISHKQHILFAKPDEK ILRKAFKGADMIHTYLPFLLEKTAVKIAREMQVPYIGSFHLQPEHISYNMKLGWFSWFNMMLFSWFKSSHYRYIHHIHCP SKFIVEELEKYNYGGKKYAISNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGK GPDEKKIKLLAQKLGVKTEFGFVNSNELLEILKTCTLYAHTANVESEAIACLEAISVGIVPIIANSPLSATRQFALDERS LFEPNNAKDLSAKIDWWLENKLERERMQNKYAKSALNYTLENSVIQIEKVYEEAIKDFKNNPSLFKTLS
Specific function: Unknown
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44989; Mature: 44989
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIVLVVDSFKDTSNGTSMTAFRFFETLKKRGHVMRVVAPYVDNLGSEEEGYYNLKERYI CEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCCCCCCCCCHHHHCC PLVTEISHKQHILFAKPDEKILRKAFKGADMIHTYLPFLLEKTAVKIAREMQVPYIGSFH HHHHCCCCCCEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE LQPEHISYNMKLGWFSWFNMMLFSWFKSSHYRYIHHIHCPSKFIVEELEKYNYGGKKYAI ECCCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEE SNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGK CCCCCCCEECCCCHHHHCCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHCCCEEEEEECC GPDEKKIKLLAQKLGVKTEFGFVNSNELLEILKTCTLYAHTANVESEAIACLEAISVGIV CCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCEE PIIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENKLERERMQNKYAKSALNYTL EEEECCCHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENSVIQIEKVYEEAIKDFKNNPSLFKTLS CCCHHHHHHHHHHHHHHHCCCCCHHCCCC >Mature Secondary Structure MVIVLVVDSFKDTSNGTSMTAFRFFETLKKRGHVMRVVAPYVDNLGSEEEGYYNLKERYI CEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCCCCCCCCCHHHHCC PLVTEISHKQHILFAKPDEKILRKAFKGADMIHTYLPFLLEKTAVKIAREMQVPYIGSFH HHHHCCCCCCEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE LQPEHISYNMKLGWFSWFNMMLFSWFKSSHYRYIHHIHCPSKFIVEELEKYNYGGKKYAI ECCCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEE SNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGK CCCCCCCEECCCCHHHHCCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHCCCEEEEEECC GPDEKKIKLLAQKLGVKTEFGFVNSNELLEILKTCTLYAHTANVESEAIACLEAISVGIV CCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCEE PIIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENKLERERMQNKYAKSALNYTL EEEECCCHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENSVIQIEKVYEEAIKDFKNNPSLFKTLS CCCHHHHHHHHHHHHHHHCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA