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The map label for this gene is yecS [C]

Identifier: 188527761

GI number: 188527761

Start: 981475

End: 982197

Strand: Reverse

Name: yecS [C]

Synonym: HPSH_04940

Alternate gene names: 188527761

Gene position: 982197-981475 (Counterclockwise)

Preceding gene: 188527762

Following gene: 188527760

Centisome position: 61.06

GC content: 41.22

Gene sequence:

>723_bases
TTGGAAAAGATGTCAGCCAGCCATAATCTGTCTTTGTTTTTTGAATCTTTAGATTTGAGCAAGGAGCGTTTGGAATTATT
ATTAGAGGCTTTCTACCCCATGCTAAAAGCCGCTTTTTGCATTTCTTTGCCTTTAGCGATCATTTCTTTCATTTTGGGCT
TATTCATTGCGGTTTTTGTGGCCCTCATTAAAATCGCGCCCCCTAAACATTTCATTCATAAGGCTTTATTAGCGGGCGTG
AATTTCTATGTTTCGCTCATTAGAGGCACGCCTTTATTGGTCCAAATCGTGGTGGTGTTTTATGGTTTGCCCGCCCTTGG
GGTCTATATTGATCCAATCCCAGCAGGCATTATTGCGTTTTCTTTTAATGTAGGGGCATACGCTTCAGAGACTTTGAGGG
CGAGTTTTCTTTCTGTCCCTAAAGATCAATGGGATTCAAGCTTGAGTTTGGGCTTGAATTACTTGCAAACCTTTTGGCAT
GTCATCTTTTTTCAAGCGCTCAAAGTCGCCACACCAAGCCTGAGTAACACTTTCATCAGCCTTTTTAAAGAAACTTCTTT
AGCTTCGGTGGTAACTGTCGCAGAGGTTTTTAGAATCGCGCAGCAAAAAGCGAACGCCAGCTATGACTTTTTGCCTATTT
ACTTGGAAGCCGCTTTGATTTACTGGCTTTTTTGCTTGGTTTTAGAAGTGATCCAAAAGCGCGTGGAAAAAATCTTAAAT
TAA

Upstream 100 bases:

>100_bases
GTCATCAACAAGCACCAAGAAAAAGCCTTAGAGCTTATCAACCAGGCGATGCAAAGATTGATAGATAAAGGGGTTTTAAA
ACGCTTAGGCGAACAATTTT

Downstream 100 bases:

>100_bases
GTTGGCTCAATCTAATCTCTTTAATATTTGGTTATAATACAGCCTAAATAAAAATAAGGAGATTTTCATGGGTGTGTTTT
TGGATAATAGCATTAAAAAT

Product: amino acid ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MEKMSASHNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLFIAVFVALIKIAPPKHFIHKALLAGV
NFYVSLIRGTPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSFNVGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWH
VIFFQALKVATPSLSNTFISLFKETSLASVVTVAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKRVEKILN

Sequences:

>Translated_240_residues
MEKMSASHNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLFIAVFVALIKIAPPKHFIHKALLAGV
NFYVSLIRGTPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSFNVGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWH
VIFFQALKVATPSLSNTFISLFKETSLASVVTVAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKRVEKILN
>Mature_240_residues
MEKMSASHNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLFIAVFVALIKIAPPKHFIHKALLAGV
NFYVSLIRGTPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSFNVGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWH
VIFFQALKVATPSLSNTFISLFKETSLASVVTVAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKRVEKILN

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=222, Percent_Identity=39.6396396396396, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=30.9178743961353, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788646, Length=216, Percent_Identity=30.5555555555556, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1787087, Length=235, Percent_Identity=28.0851063829787, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=29.3577981651376, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI87082239, Length=165, Percent_Identity=33.9393939393939, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788645, Length=230, Percent_Identity=26.0869565217391, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786874, Length=218, Percent_Identity=23.394495412844, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786873, Length=206, Percent_Identity=25.7281553398058, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26792; Mature: 26792

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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>Mature Secondary Structure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PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]