Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

Click here to switch to the map view.

The map label for this gene is surE

Identifier: 188527753

GI number: 188527753

Start: 973939

End: 974742

Strand: Direct

Name: surE

Synonym: HPSH_04900

Alternate gene names: 188527753

Gene position: 973939-974742 (Clockwise)

Preceding gene: 188527752

Following gene: 188527754

Centisome position: 60.55

GC content: 40.55

Gene sequence:

>804_bases
ATGAAAAAAATTTTACTCACCAACGATGATGGCTACCATGCAAAAGGCATTAAAGCTTTAGAACAAGCTTTAGAAAAAAT
GGCAGAAATTTATGTGGTCGCCCCCAAGCATGAAAAAAGCGCATGCTCGCAATGCATCACCATCACTGCGCCTTTAAGAG
CGGAGAAAATTAAGGGCAAAGAAGGCAGGCATTATAAGATTGATGATGGCACGCCAAGCGATTGCGTGTATTTAGCGATC
AATGAGCTTTTTAAACATGTTTGTTTTGATTTAGTGATTTCAGGGATCAATCTTGGATCCAACATGGGCGAAGACACGAT
TTATTCTGGAACGGTGGCCGGAGCGATTGAAGGCACCATTCAGGGCGTGCCTTCCATTGCGATTTCTCAAATCCTTTCTC
ATAGAAACAAAAACACGCCCCTAAGTTTTGATCTGGCTCAAAAGATTATCCAGGATTTAGTCCAAAACATTTTCACAAAC
GGCTACCCTTTAAAAGGGCGCAAGCTTTTGAATGTGAATGTCCCTAATTGCTCCTTACAAGAATATAAGGGCGAATGCAT
CACCCCTAAGGGCTATAGGTTGTATAAAAAAGAAGTGCATAAGCGCACAGACCCCAAAAATGAAAGCTATTTTTGGCTAG
GGTTACACCCTTTAGAATGGCAAAAGCGCGAAAATGAAGACAGACTCTCTGATTTTGACGCTATTGCTTCAAACCATGTC
TCTATCACGCCTTTAAATTTAGACTTAACCAGTTATGATGATTTGAAAAATTTGGAATCTTGGCATAAGGGAATGTTAAA
GTGA

Upstream 100 bases:

>100_bases
AAACAGAGGTTTTAGACGATTTAAACCTACTAAAACCCGCTTATCCTTTATTGCAAGAAAATTTGAACGCATTATTGAAC
ACTCTATTTAAAGGTAAGAC

Downstream 100 bases:

>100_bases
GTAAAAATCACCGCTTGGCTTTTTTAGGGCTAATTGTTGGGGTTCTATTCTTCTTTAGCGCATGCCAACACCGCTTGCAC
ATGGGGTATTATTCAGAAGT

Product: stationary phase survival protein SurE

Products: NA

Alternate protein names: Nucleoside 5'-monophosphate phosphohydrolase [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKKILLTNDDGYHAKGIKALEQALEKMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYKIDDGTPSDCVYLAI
NELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTN
GYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHV
SITPLNLDLTSYDDLKNLESWHKGMLK

Sequences:

>Translated_267_residues
MKKILLTNDDGYHAKGIKALEQALEKMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYKIDDGTPSDCVYLAI
NELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTN
GYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHV
SITPLNLDLTSYDDLKNLESWHKGMLK
>Mature_267_residues
MKKILLTNDDGYHAKGIKALEQALEKMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYKIDDGTPSDCVYLAI
NELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTN
GYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHV
SITPLNLDLTSYDDLKNLESWHKGMLK

Specific function: Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates [H]

COG id: COG0496

COG function: function code R; Predicted acid phosphatase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surE nucleotidase family [H]

Homologues:

Organism=Escherichia coli, GI1789101, Length=259, Percent_Identity=35.9073359073359, Blast_Score=162, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002828 [H]

Pfam domain/function: PF01975 SurE [H]

EC number: =3.1.3.5 [H]

Molecular weight: Translated: 30034; Mature: 30034

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILLTNDDGYHAKGIKALEQALEKMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGK
CCEEEEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHEEEEECCCHHHHCCCC
EGRHYKIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTI
CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHH
QGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTNGYPLKGRKLLNVNVPNCSLQ
CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHH
EYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHV
HHCCCEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCE
SITPLNLDLTSYDDLKNLESWHKGMLK
EEEEEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKILLTNDDGYHAKGIKALEQALEKMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGK
CCEEEEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHEEEEECCCHHHHCCCC
EGRHYKIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTI
CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHH
QGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTNGYPLKGRKLLNVNVPNCSLQ
CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHH
EYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHV
HHCCCEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCE
SITPLNLDLTSYDDLKNLESWHKGMLK
EEEEEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA