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The map label for this gene is yccA [C]

Identifier: 188527744

GI number: 188527744

Start: 959179

End: 959871

Strand: Reverse

Name: yccA [C]

Synonym: HPSH_04845

Alternate gene names: 188527744

Gene position: 959871-959179 (Counterclockwise)

Preceding gene: 188527747

Following gene: 188527743

Centisome position: 59.67

GC content: 39.83

Gene sequence:

>693_bases
ATGGCATTGTATGACAGAGCTGATTCTCGTAATGCGTATGCAGAGAATTCTTTATTGCATGAAAGCGAGCTAGTGAGTTT
TGTTAAAACGACTTACAAGTTCTTTGCAGGCAGTTTGTTACTAGCGACTATCGGAGCGTTATTAGGTTTGATGAATTTTC
AAGCCGTAGTGCAGTATAAATGGGTGTTTTTTATCGCTGAAATTGCGGCGTTTTTTGGTTTGATGTTTTCTAAATCCAAA
CCCGGATTGAATCTGTTCATGCTGTTTGCTTTCACTTCATTATCAGGGGTTACTCTAGTGCCTTTGTTGGGTATGGTGAT
CGCAAAAGCTGGTTTAGGAGCGATTTGGCAAGCTTTAGGCATGACAACTATTGTTTTTGGTTTGATGAGCGTGTATGCCC
TTAAGACTAAAAACGACTTAGCTAATATGGGTAAAATGCTCTTTATCGCTTTGATTGTGGTGGTGGTGTGTTCGCTCATT
AACTTGTTTTTGGGTAGCCCCATGTTCCAGGTTGTCATTGCGGGAGCGAGTGCGATTTTATTCAGTCTTTATATCGCTTA
TGACACCCAAAACATCGTTAAAGGCATGTATGATAGCCCCATTGATGCGGCGGTGAGCTTGTATTTAGACTTTTTGAATG
TCTTTATTTCTATCTTGCAAATCATTGGTATTTTTTCAGACAGGGATAAATAG

Upstream 100 bases:

>100_bases
GGGGTTTTGTTTGGTATTTTACTACATTTTGCGCTATTATATTGAACCTAGCTGTAGGGTTAATTAAATTATTTATTGAG
TTGAATTCAAGGAGTAAAAC

Downstream 100 bases:

>100_bases
TTTGAAAAAATAGGGGGGGAAGCCACGCAAAAACCTAATAAAAAATATTCTAAAATATTGATAACGCTTGATATTCTTTC
TTTAAGGATTAGTGATGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MALYDRADSRNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSK
PGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLI
NLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK

Sequences:

>Translated_230_residues
MALYDRADSRNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSK
PGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLI
NLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>Mature_229_residues
ALYDRADSRNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSKP
GLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLIN
LFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Homo sapiens, GI116812579, Length=208, Percent_Identity=29.3269230769231, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI118200356, Length=245, Percent_Identity=27.3469387755102, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787205, Length=170, Percent_Identity=35.8823529411765, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787004, Length=160, Percent_Identity=31.875, Blast_Score=72, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24646768, Length=176, Percent_Identity=31.25, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24653227, Length=134, Percent_Identity=34.3283582089552, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24653221, Length=244, Percent_Identity=27.4590163934426, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24653223, Length=244, Percent_Identity=27.4590163934426, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45551091, Length=244, Percent_Identity=27.4590163934426, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI17647735, Length=244, Percent_Identity=27.4590163934426, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24653225, Length=244, Percent_Identity=27.4590163934426, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24653219, Length=153, Percent_Identity=35.9477124183007, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI19922136, Length=153, Percent_Identity=36.6013071895425, Blast_Score=68, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 25149; Mature: 25018

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALYDRADSRNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALG
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
MTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALYDRADSRNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALG
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
MTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]