| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is bhuA [H]
Identifier: 188527741
GI number: 188527741
Start: 952775
End: 955216
Strand: Reverse
Name: bhuA [H]
Synonym: HPSH_04830
Alternate gene names: 188527741
Gene position: 955216-952775 (Counterclockwise)
Preceding gene: 188527742
Following gene: 188527740
Centisome position: 59.38
GC content: 42.1
Gene sequence:
>2442_bases ATGAATGACAAGCGTTTTAGGAAATATTGTAGTTTTTCTCTTTTTTTGTCCTTATTAGGAATGTTTGAATTGGAGGCTAA AGAAGAAGAAAAAGAAGAAAGAAAGACAGAAAGAAAAAAGGATAAAAAAAAGAACGCCCAACACACTCTAGGCAAAGTTA CCACTCAAGCGGCTAAAATCTTTAATTACAACAACCAGACAACCATTTCAAGTAAAGAATTAGAAAGAAGGCAAGCCAAC CAAATCAGCGACATGTTTAGAAGAAACCCTAATATCAATGTGGGCGGTGGCGCGGTTATAGCGCAAAAAATTTATGTGCG CGGTATTGAAGACAGATTGGCTAGGGTTACGGTGGATGGTGTAGCTCAAATGGGCGCAAGCTATGGGCATCAAGGCAATA CGATTATTGACCCTGGAATGCTCAAAAGCGTGGTGGTTACTAAGGGGGCGGCTCAAGCGAGCGCGGGGCCTATGGCTTTG ATTGGCGCGATTAGAATGGAGACTAGAAGCGCGAGCGATTTTATCCCTAAAGGTAAAAACTACGCCATGAGTGGGGCTGC CACTTTTTTAACTAACTTTGGGGATCGAGAAACCGTGATGGGTGCTTATCGTAACAATCATTTTGATATTCTTTTATATT ACACGCATCAAAATATTTTCTATTATCGTGATGGGGATAATGCCACAAAAGATCTTTTTAGACCTAAAGCGGATAATAAA GTTACAGGAAGTCCTAGCGAACAAAACAATGTGATGGCTAAGATCAATGGCTATTTGAGCGAAAGGGATACCTTAACGCT CAGTTATAACATGACCAGAGATAACGCTAATCGCCCCTTAAGAGCGAATTTTACAGGCACTTTTTTACCCTATTCTTGCG GTGATTTTAACGCTTTCCCTAACGAGAAAAACCCTAGCGATTGCTTGTTTGAAAATGACGCTAGTTTGTTTAAAACTTAT AGCGTCAATTTAGTACATAATGTGAGTTTGAACTATGAAAGAGAAGGGGGGAGTCGTTTTGGTGATCCTAAATTAAAAAT CAATGGTTATACAAGCATTAGGAATGTCCAAATTGATCCGCTTTTTAGGCCTAACGATATAGCGGCTATCATTCCTTTCA CCCCAAACCCAGAACTTGGCGAAGAAAATGAATGCGTGGCGCAAGGGGGTATTTATGACGCTACTAAACAAACTTGCTCC ATCACTTTTAAAAGCCTTGGAGGAGGTTCTGTGGTGGCTAATAAAAATTTATTCATCATCAATTCCGGGTTTAATGCGAA TGTGATCCACACCATAGACCATAAGAATGACAATCTTTTTGAATACGGGTTGAATTACCAAAACTTAACCACTTTTGATA AAGCGATCCCTAATAGCGAATTAGTCAAACCCGGCGATGCCCCTGATGCATGCTTAAGGGTTAGAGGCCCTAATGATCCC AACATGAACGGGCGATGCCAAAGGAATGGCGCTAGCGCGAATGTGGTTGGGGTGTATGCGCAAGCGAATTACACCTTGCA CCCCATGGTAACTTTAGGGGCAGGGACTCGTTATGATGTCTATACTTTAGTGGATAAAGATTGGCAGTTGCACATAACTC AAGGGTTTAGCCCTAGCGCGGCTTTAAATGTCTCGCCTTTAGAAAATTTGAATTTCAGGCTTTCTTACGCGTATGTAACC AGAGGCCCTATGCCTGGAGGTTTGGTGTGGATGCGTCAAGATAATTTGCGCTATAACCGCAATTTAAAGCCAGAGATCGG GCAAAATGTGGAATTTAACACCGAATACAGCAGTAAGTATTTTGATTTCAGGGCCGCAGGTTTTGTCCAACTGATTTCTA ATTACATCAACCAATTTTCTTCAACGCTTTTTGTAACCAACTTGCCCGCACAAGATATTATTTATGTGCCTGGTTATGAA GTTTCAGGGACGGCTAAATACAAGGGCTTTTCTTTAGGCTTGAGCGTGGCGCGATCATGGCCTTCTTTAAAAGGGCGCTT GATCGCTGATGTGTATGAATTGGCTGCCACAACAGGCAATGTGTTTATTTTAACGGCAAGCTATAAAATCCCACGCACCG GCCTTAGCATCACTTGGCTTTCACGCTTTGTTACGGATTTGAGTTATTGCTCTTATAGCCCCTATCGCAACGGCCCTACG GATATTGACAGACGGCCTAGCAATTGCCCCAAAACGCCCGGGATTTTTCATGTGCATAAGCCCGGTTATGGGGTGAGCAG TTTTTTTGTAACCTACAAACCCACCTATAAGAAGCTTGAAGGCTTGAGTTTGAATGCGGTGTTTAACAATGTTTTTAACC AACAATATATTGATCAAGCAAGCCCGGTGATGAGCCCTGATGAACCCAATCAAGACAAATACGCAAGGGGCATGGCAGAG CCTGGCTTTAACGCAAGGTTTGAAATTTCTTATAAGTTTTAA
Upstream 100 bases:
>100_bases TCAAAAATGGCTAGCTCTTTTAAGGTGGTTGTAATATTTTTTTGACTACAATAACACCTTTATTTTTTTAAGAAAAATTA TTATAAGTAGGATTTTAAGA
Downstream 100 bases:
>100_bases TAATGGAGCTAAAAATGAGGGTTTCATGGGTAGCGAGTTTAATCAAAAATAAAACATTCTTTAGAAGTAACAAATATATG ATTTTAATCTTTTCATTTTA
Product: iron-regulated outer membrane protein
Products: NA
Alternate protein names: Brucella heme uptake protein A [H]
Number of amino acids: Translated: 813; Mature: 813
Protein sequence:
>813_residues MNDKRFRKYCSFSLFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQAN QISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGVAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMAL IGAIRMETRSASDFIPKGKNYAMSGAATFLTNFGDRETVMGAYRNNHFDILLYYTHQNIFYYRDGDNATKDLFRPKADNK VTGSPSEQNNVMAKINGYLSERDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTY SVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFRPNDIAAIIPFTPNPELGEENECVAQGGIYDATKQTCS ITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVRGPNDP NMNGRCQRNGASANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVT RGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSKYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYE VSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPT DIDRRPSNCPKTPGIFHVHKPGYGVSSFFVTYKPTYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAE PGFNARFEISYKF
Sequences:
>Translated_813_residues MNDKRFRKYCSFSLFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQAN QISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGVAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMAL IGAIRMETRSASDFIPKGKNYAMSGAATFLTNFGDRETVMGAYRNNHFDILLYYTHQNIFYYRDGDNATKDLFRPKADNK VTGSPSEQNNVMAKINGYLSERDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTY SVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFRPNDIAAIIPFTPNPELGEENECVAQGGIYDATKQTCS ITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVRGPNDP NMNGRCQRNGASANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVT RGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSKYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYE VSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPT DIDRRPSNCPKTPGIFHVHKPGYGVSSFFVTYKPTYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAE PGFNARFEISYKF >Mature_813_residues MNDKRFRKYCSFSLFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQAN QISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGVAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMAL IGAIRMETRSASDFIPKGKNYAMSGAATFLTNFGDRETVMGAYRNNHFDILLYYTHQNIFYYRDGDNATKDLFRPKADNK VTGSPSEQNNVMAKINGYLSERDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTY SVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFRPNDIAAIIPFTPNPELGEENECVAQGGIYDATKQTCS ITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVRGPNDP NMNGRCQRNGASANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVT RGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSKYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYE VSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPT DIDRRPSNCPKTPGIFHVHKPGYGVSSFFVTYKPTYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAE PGFNARFEISYKF
Specific function: Heme transporter playing an important role in stationary-phase iron acquisition and required for maintenance of chronic infection in mice [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 90865; Mature: 90865
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDKRFRKYCSFSLFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKI CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDG EECCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHHHCHHHHHHEEEHHH VAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIRMETRSASDFIPKGKN HHHHHHHCCCCCCEEECCHHHHHHHEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC YAMSGAATFLTNFGDRETVMGAYRNNHFDILLYYTHQNIFYYRDGDNATKDLFRPKADNK EECCCHHHHHHCCCCCHHEEHHCCCCCEEEEEEEEECEEEEEECCCCCHHHHCCCCCCCC VTGSPSEQNNVMAKINGYLSERDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFP CCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCEEECCCEEECCCCCCCCCCCC NEKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDP CCCCCCCCEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEEECC LFRPNDIAAIIPFTPNPELGEENECVAQGGIYDATKQTCSITFKSLGGGSVVANKNLFII CCCCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECCCCEEEECCCEEEE NSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVRGPNDP ECCCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCCC NMNGRCQRNGASANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSA CCCCEEECCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCC ALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSKY EEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCE FDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSW EEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEECCEEECCCEEECCEEHHHHHHHCC PSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPT CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC DIDRRPSNCPKTPGIFHVHKPGYGVSSFFVTYKPTYKKLEGLSLNAVFNNVFNQQYIDQA CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHC SPVMSPDEPNQDKYARGMAEPGFNARFEISYKF CCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECC >Mature Secondary Structure MNDKRFRKYCSFSLFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKI CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDG EECCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHHHCHHHHHHEEEHHH VAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIRMETRSASDFIPKGKN HHHHHHHCCCCCCEEECCHHHHHHHEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC YAMSGAATFLTNFGDRETVMGAYRNNHFDILLYYTHQNIFYYRDGDNATKDLFRPKADNK EECCCHHHHHHCCCCCHHEEHHCCCCCEEEEEEEEECEEEEEECCCCCHHHHCCCCCCCC VTGSPSEQNNVMAKINGYLSERDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFP CCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCEEECCCEEECCCCCCCCCCCC NEKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDP CCCCCCCCEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEEECC LFRPNDIAAIIPFTPNPELGEENECVAQGGIYDATKQTCSITFKSLGGGSVVANKNLFII CCCCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECCCCEEEECCCEEEE NSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVRGPNDP ECCCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCCC NMNGRCQRNGASANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSA CCCCEEECCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCC ALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSKY EEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCE FDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSW EEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEECCEEECCCEEECCEEHHHHHHHCC PSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPT CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC DIDRRPSNCPKTPGIFHVHKPGYGVSSFFVTYKPTYKKLEGLSLNAVFNNVFNQQYIDQA CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHC SPVMSPDEPNQDKYARGMAEPGFNARFEISYKF CCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA