| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527710
Identifier: 188527710
GI number: 188527710
Start: 916302
End: 918146
Strand: Reverse
Name: 188527710
Synonym: HPSH_04660
Alternate gene names: NA
Gene position: 918146-916302 (Counterclockwise)
Preceding gene: 188527714
Following gene: 188527709
Centisome position: 57.08
GC content: 37.56
Gene sequence:
>1845_bases ATGAGCTTGGAGCATTTTGCCCCTATAAAAGTTGAGCGGTGCAAAGACATTCAAAAAGAATTAAAAAAAGCGGCCGCTGA AAATAGATTGCAAACAGAAGATCTATGGTTTGAGATTTTAAAAACTTCTATTTTTATCAAAAACAGCGCTAAAGACGATT TCAGCGAGGCTTTTGGTGGGGAATTGCAACAATTAGAAGAAGATGAATACTATGAAAAAAAAGAGCTAACCCTTTATCAA ACCCACGACATTAAAATCAAATCAAACGCTTATAAGCGCTTTTTTGAAGTGGAAGTGGATGAACATTTGAGTAAAATAGA AATCGTTTTAGACGAGTGTTTTATTGTCCTAGACACTGAAGAGCATTACCAAGAAATGTTTGCGTATATTAAAGAGTGTT TAGCCTTTGAAGGCGTGGTGTTTCGCCACCTTTCACAAATGTATGAAAATTTAAAAACAGAGTTAAGAAAATATAAAAAA GAAGCCCAAAATAAGCACTTTATTTTATACGCTTCTTCAACCTTTATCCCTAATACAGAAGAACAATCCCATTTTTTATT AGAAGAAGAATACCTTCCAACGCATATTATTCCTTTAAGCGATCAAGAAGAATCGTTTGTTAAAGAAAATGATTATATCG CTAAAGAAAATCAAAAAGTCGCTTGCGTGAATTACCCCAAACAAGGCAAAGACGGCCGTAACCTTAAGGGTCTTTATATT GAATTGCCTAAAGTTGCCAATTCGCCCACCCCTATAGGGCATGACAAAAACGCTTTTGAAGAAAGAGAAGAAAATAACGC TTTAGTGTATTACTCCAAAGCCTTACAAGGGGTTAAAATGGAAAAAGGGCGTTTGGTTTCTAAGCAAAATTTTATTTTTA AAAACGGGATCAAATCCATTGAAACGCCCAATCTTTTAGGGGGGGTGGAGAGCGGGTTGGTTTTAGAAATTCAAGCTAAA GATGAATTGAGCGATGCGATTGATTCTAACCTCATTTTAGAAGCGAGCGCGATTAACATTAAGGGCAATGTGGGCAAGAA TGTGATCTTAGTGGCTAAAGAAATTACTATAGAGGGGCAAATCCACCCTGAAGGCTATGTTTATGCCAATAAAGCGCGTA TCACTAACCATAAGGGCGTGTGCTACGCTAAAGAGTTTGAGTGCAAGTATTTAGAGCGCGCTAAGGTGTATGCCAATAGC GTTAAAGTGGAAGCGAGCGCAGGGAGCGTGGTCTATGCGAAAGAAATAGCTTTAGAAAAGCTCAAAAGCGATAACAAGCT GTATTTTTCCAAGCAATGTTTGATTGATGAAGTGGATGGCAATGGCAACCGCTTTATTTTTTACGCTTTTGGGGGGCGAG AAAACCAAGAGGAATTGAAAGCCGCTAAACAAAAACTCAATGCGTTAGGGTTAAAATCCAAAAAAATCATCGCTCAGCAC CAGTCCTTAAACCATTTAGTCAAAAACCATCAAGCCATCATGGAAAAGTTTAAAAACGCTACCGAAGAAATCAAACGCTC TTTAATGCAACAAGAAAGCGTGAAAGACGCTTATAGCGAGTTTGTGTTTGCCTTAAAGCGTTTGAAAATCTTAAAAGCCC AAATGCTAGAATTGCAAAAAATCAATAACGAATGCTACGCTAAACTCATTAGCATAGAAAACAGCTTCCAGCATGCAAGC GTTATGACTAAAAACCCTTTCAAGCAAGAAAATATCGTGATCTACCATCGCAATTACCCTAAAGTGAGCAACTTGAGCGC TATGTTAAGCCATAATGAAAGCGTGAATGTGATCTATGAAGATCATAAAATCAAAAAAGTCCCTAAAAGCGCCATAAAAG GCTAG
Upstream 100 bases:
>100_bases TTTAGCATACTAGTTGTATTTATTACCTAATTTTTAGCGTTTTTTTGTTAGCATATTCCTTTTTTCAAATTCTTATATTA TACCATTTAAGGATTAAAAA
Downstream 100 bases:
>100_bases AGCGAGAAATAAAAAAGGGATAAAATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATAT AGAAGTGCAAGGGGTTGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 614; Mature: 613
Protein sequence:
>614_residues MSLEHFAPIKVERCKDIQKELKKAAAENRLQTEDLWFEILKTSIFIKNSAKDDFSEAFGGELQQLEEDEYYEKKELTLYQ THDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTEEHYQEMFAYIKECLAFEGVVFRHLSQMYENLKTELRKYKK EAQNKHFILYASSTFIPNTEEQSHFLLEEEYLPTHIIPLSDQEESFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYI ELPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSIETPNLLGGVESGLVLEIQAK DELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQIHPEGYVYANKARITNHKGVCYAKEFECKYLERAKVYANS VKVEASAGSVVYAKEIALEKLKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQH QSLNHLVKNHQAIMEKFKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSFQHAS VMTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYEDHKIKKVPKSAIKG
Sequences:
>Translated_614_residues MSLEHFAPIKVERCKDIQKELKKAAAENRLQTEDLWFEILKTSIFIKNSAKDDFSEAFGGELQQLEEDEYYEKKELTLYQ THDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTEEHYQEMFAYIKECLAFEGVVFRHLSQMYENLKTELRKYKK EAQNKHFILYASSTFIPNTEEQSHFLLEEEYLPTHIIPLSDQEESFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYI ELPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSIETPNLLGGVESGLVLEIQAK DELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQIHPEGYVYANKARITNHKGVCYAKEFECKYLERAKVYANS VKVEASAGSVVYAKEIALEKLKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQH QSLNHLVKNHQAIMEKFKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSFQHAS VMTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYEDHKIKKVPKSAIKG >Mature_613_residues SLEHFAPIKVERCKDIQKELKKAAAENRLQTEDLWFEILKTSIFIKNSAKDDFSEAFGGELQQLEEDEYYEKKELTLYQT HDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTEEHYQEMFAYIKECLAFEGVVFRHLSQMYENLKTELRKYKKE AQNKHFILYASSTFIPNTEEQSHFLLEEEYLPTHIIPLSDQEESFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYIE LPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSIETPNLLGGVESGLVLEIQAKD ELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQIHPEGYVYANKARITNHKGVCYAKEFECKYLERAKVYANSV KVEASAGSVVYAKEIALEKLKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQHQ SLNHLVKNHQAIMEKFKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSFQHASV MTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYEDHKIKKVPKSAIKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70614; Mature: 70482
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLEHFAPIKVERCKDIQKELKKAAAENRLQTEDLWFEILKTSIFIKNSAKDDFSEAFGG CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEECCCCCHHHHHHCC ELQQLEEDEYYEKKELTLYQTHDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTE HHHHCCHHHHHCCCCEEEEEEEEEEECCCHHHHEEEEEHHHHHHHHHHEEECEEEEEECH EHYQEMFAYIKECLAFEGVVFRHLSQMYENLKTELRKYKKEAQNKHFILYASSTFIPNTE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC EQSHFLLEEEYLPTHIIPLSDQEESFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYI CCCCEEEECCCCCEEEEECCCCHHHHHHCCCCEECCCCEEEEECCCCCCCCCCCCCEEEE ELPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSI ECCCCCCCCCCCCCCCHHHHHHCCCCEEEEEHHHHCCCCCCCCCEECCCCCHHHCCCCCC ETPNLLGGVESGLVLEIQAKDELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQ CCCCHHCCCCCCEEEEEECCHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEEE IHPEGYVYANKARITNHKGVCYAKEFECKYLERAKVYANSVKVEASAGSVVYAKEIALEK ECCCCEEEECCEEEECCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHH LKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQH HCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHH QSLNHLVKNHQAIMEKFKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH INNECYAKLISIENSFQHASVMTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYE HCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEE DHKIKKVPKSAIKG CCHHHHCCHHHCCC >Mature Secondary Structure SLEHFAPIKVERCKDIQKELKKAAAENRLQTEDLWFEILKTSIFIKNSAKDDFSEAFGG CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEECCCCCHHHHHHCC ELQQLEEDEYYEKKELTLYQTHDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTE HHHHCCHHHHHCCCCEEEEEEEEEEECCCHHHHEEEEEHHHHHHHHHHEEECEEEEEECH EHYQEMFAYIKECLAFEGVVFRHLSQMYENLKTELRKYKKEAQNKHFILYASSTFIPNTE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC EQSHFLLEEEYLPTHIIPLSDQEESFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYI CCCCEEEECCCCCEEEEECCCCHHHHHHCCCCEECCCCEEEEECCCCCCCCCCCCCEEEE ELPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSI ECCCCCCCCCCCCCCCHHHHHHCCCCEEEEEHHHHCCCCCCCCCEECCCCCHHHCCCCCC ETPNLLGGVESGLVLEIQAKDELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQ CCCCHHCCCCCCEEEEEECCHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEEE IHPEGYVYANKARITNHKGVCYAKEFECKYLERAKVYANSVKVEASAGSVVYAKEIALEK ECCCCEEEECCEEEECCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHH LKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQH HCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHH QSLNHLVKNHQAIMEKFKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH INNECYAKLISIENSFQHASVMTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYE HCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEE DHKIKKVPKSAIKG CCHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA