| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is 188527590
Identifier: 188527590
GI number: 188527590
Start: 791682
End: 792932
Strand: Direct
Name: 188527590
Synonym: HPSH_04060
Alternate gene names: NA
Gene position: 791682-792932 (Clockwise)
Preceding gene: 188527588
Following gene: 188527591
Centisome position: 49.22
GC content: 38.85
Gene sequence:
>1251_bases GTGGCAATAAACACCTTTTTAAAACATTCTTTTCTGGTCTGTTTGTTAGCGGTTAATTCTTACGCTTTTGATTGGAATAT TTTTAAATACAATTTGGGTTTCAATATGTTTATCATGGACCATGAAGGCTCAACGCCTTATTGGGTCAATACTAACACCA ATCTTAAAACCCGTTTGACTCCAAATTTTGGGATCCAATTTTATACAAAAGGTGTGGAGCAAAGCCTTACTGTGGGGGCG TATTTTTTTCAAAACTTCCATAACTACAGCACTAATTTTCCCTACCGCTGGGGGCCTACTATGTATTATAAGGCTAGGGG GAAGCGTTTTACTTTTTATGGTGGGATTTTTCCCAGGAAAAACCTCTTAGGAAGGTATGGTTTGAATATTTTTGCCCCTT ATTATTGGTTTATAGATCCAAACGCTAGAGGGTTTTTATTGCAATTTCAAAACCATTATTCGCCTTCAAAACCCTATTAT GGGCACGCAGAGTTCATGCTAGATTGGTTTGGAGGCAATTGTTACAACACTTGTAAATTCGGGAGAAACCCCTATGGGAA CGCAATGGACAGGTTTCAAATGAACGGCTCTGTCGCTTATAATTTCTTTAAGGATTTATTGGGTATTGGAGGGTATTTTG TCTTGTTCCATAACGAAGACAAATACCTTTTGAATGGGGCTGATGGCATGCAGTTTAATGAAAAAAAAGCGATTGACAAC AATAATATTTATCTTATGGATCGCCTCTACTTTAACGCTTACATAGGGACAAGCCTTTTAGACATCGCCCCCTTTATGGA AAAACTCAACGCCAGTTTTGGTATGGTTTCTGAATCAAGCCGATTAAGGCAAATTCATAAAAATGTGCCTTTTATGAACA GCGTGGGGGGGCAATTGGATGTGGAGATCCAATACAAAGGCTTTGGAATACACAATTTATTTTTCTTCGCCAAGACCCCA GAGATGCCTTTTTATAACCAATACCAGTATGTTGAAATGTATTGCACGCCTTCTTATTGCCCCACGCCTATTTATCGCGG CGTGCCATTCTTTCAAGCCAACATGTATAATCGTTTTGATTTGTATTACAATTGGAAAAACGACTTCGCATCGGTTCGCA TCAACTTCGTGCTTAATGCGATGCGTGGGGGCTTTGATAGGAGCTTGCCTTGGTCAGAATCTTATCAAGTGTATATGACG GTTGCCTTTGATCCCTACAACCTTATTAACAAAATTGCTAGAAAAAAATAA
Upstream 100 bases:
>100_bases ATATTAAATCTAAAGAAAAATATTTTTAGATGTGCTAGAATACCCATTTGTTACAAGATAAGCTTTTTTATCAAAAATAA TGATGACATAGGGGTAACAA
Downstream 100 bases:
>100_bases AAATTCTTGACAATCGGTTAATCTGTCTTATATAATATTATTTCATTTGTAGCCATTGTTTGAGCAATGATTTTAAGCTA TGGAAAAGAGGTGATAGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MAINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLTPNFGIQFYTKGVEQSLTVGA YFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRKNLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYY GHAEFMLDWFGGNCYNTCKFGRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN NNIYLMDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLDVEIQYKGFGIHNLFFFAKTP EMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFDLYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMT VAFDPYNLINKIARKK
Sequences:
>Translated_416_residues MAINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLTPNFGIQFYTKGVEQSLTVGA YFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRKNLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYY GHAEFMLDWFGGNCYNTCKFGRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN NNIYLMDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLDVEIQYKGFGIHNLFFFAKTP EMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFDLYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMT VAFDPYNLINKIARKK >Mature_415_residues AINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLTPNFGIQFYTKGVEQSLTVGAY FFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRKNLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYYG HAEFMLDWFGGNCYNTCKFGRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDNN NIYLMDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLDVEIQYKGFGIHNLFFFAKTPE MPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFDLYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMTV AFDPYNLINKIARKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49006; Mature: 48875
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLT CCCHHHHHHHHHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCCCEEEECCCCEEEEEC PNFGIQFYTKGVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRK CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCH NLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKF HHHHHCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEECCC GRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN CCCCCCCCHHHEECCCCCHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCC NNIYLMDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLD CCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEE VEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFD EEEEEECCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHCCCCEEECCCCEEEE LYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMTVAFDPYNLINKIARKK EEEECCCCCEEEEEEEEEEHHHCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCC >Mature Secondary Structure AINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLT CCHHHHHHHHHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCCCEEEECCCCEEEEEC PNFGIQFYTKGVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRK CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCH NLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKF HHHHHCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEECCC GRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN CCCCCCCCHHHEECCCCCHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCC NNIYLMDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLD CCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEE VEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFD EEEEEECCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHCCCCEEECCCCEEEE LYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMTVAFDPYNLINKIARKK EEEECCCCCEEEEEEEEEEHHHCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA