Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527395

Identifier: 188527395

GI number: 188527395

Start: 578626

End: 579273

Strand: Direct

Name: 188527395

Synonym: HPSH_03020

Alternate gene names: NA

Gene position: 578626-579273 (Clockwise)

Preceding gene: 188527392

Following gene: 188527396

Centisome position: 35.97

GC content: 38.89

Gene sequence:

>648_bases
TTGAAAAGGGCTAAACCAACCAAAGATAAAGCGGTCAGGGATAAACTGGCTTGCAAGCTTTTATTTTTGAAACTCAAAGA
TTATCAAAATATTTTATTGTATAGCCCATTAGGGCATGAGCTTGACATTAGGCTTTTGATTTTGAAGTTAAGACAAAAAA
ATAAGCGCGTGTGGTTGCCTAAAAGCATCAAAAAAGGCGCTGATTTTTCTAAAGAGGGTTTCACTATCGCGCCCTTTAGG
TTGCCCTTAAGGCGTTTGGGGTGGTTTGATGAGCCGAGTTTGTCGCGTTATTATAAGCAGGAATTAGATTGTATTGTCGT
GCCGATTTTAGGGATGGATACAAGCTTTAGGCGCGTGGGTTTTGGGCTAGGCATGTATGATAGGAGTTTGCCCCAATTAT
TCAAAAGGCGGTTAAAACGCCCCTTAATCGTGTTTGTGAGTAGGGAATTAGCCATAGCTAATGGTGTTCTTACAGACGCT
TATGACATTGAAGCGGATCTTTATATGAATGCTCGTATCGTTATGAAGAATAATAAAAGGAAACATTATGAGCAGCGGGT
TAATTTACATTTCATTAGAAGTCTTAGTAGCGTGTTTGATTACCGCTCTAGTCATGTATTATGTGATGAAAAAGATCTAT
TATGCTAG

Upstream 100 bases:

>100_bases
AAAATGGTAACTAATAACCTAAAATTATACTATAATGTAAGTCTAAAATTTAAGGATTATAACCATTAAAACGATTTTTA
GAGATTTTTGTAAAGAACGC

Downstream 100 bases:

>100_bases
AGGGCAAACCATTTTAAAAGGCGCTTCAGCTAAAGCCAAATTAATGGAGTTTCAAGCGAAATCTTTTGTGGAAGCTGAAG
AGATGCGCATGAAAAGCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: 5 10-Methenyltetrahydrofolate Synthetase

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKRAKPTKDKAVRDKLACKLLFLKLKDYQNILLYSPLGHELDIRLLILKLRQKNKRVWLPKSIKKGADFSKEGFTIAPFR
LPLRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLFKRRLKRPLIVFVSRELAIANGVLTDA
YDIEADLYMNARIVMKNNKRKHYEQRVNLHFIRSLSSVFDYRSSHVLCDEKDLLC

Sequences:

>Translated_215_residues
MKRAKPTKDKAVRDKLACKLLFLKLKDYQNILLYSPLGHELDIRLLILKLRQKNKRVWLPKSIKKGADFSKEGFTIAPFR
LPLRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLFKRRLKRPLIVFVSRELAIANGVLTDA
YDIEADLYMNARIVMKNNKRKHYEQRVNLHFIRSLSSVFDYRSSHVLCDEKDLLC
>Mature_215_residues
MKRAKPTKDKAVRDKLACKLLFLKLKDYQNILLYSPLGHELDIRLLILKLRQKNKRVWLPKSIKKGADFSKEGFTIAPFR
LPLRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLFKRRLKRPLIVFVSRELAIANGVLTDA
YDIEADLYMNARIVMKNNKRKHYEQRVNLHFIRSLSSVFDYRSSHVLCDEKDLLC

Specific function: Unknown

COG id: COG0212

COG function: function code H; 5-formyltetrahydrofolate cyclo-ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25310; Mature: 25310

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAKPTKDKAVRDKLACKLLFLKLKDYQNILLYSPLGHELDIRLLILKLRQKNKRVWLP
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHEEHHHHCCCEEECC
KSIKKGADFSKEGFTIAPFRLPLRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVG
HHHHCCCCCCCCCCEECHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHH
FGLGMYDRSLPQLFKRRLKRPLIVFVSRELAIANGVLTDAYDIEADLYMNARIVMKNNKR
CCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCCCEECCEEEEEEEEEEEECCCH
KHYEQRVNLHFIRSLSSVFDYRSSHVLCDEKDLLC
HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC
>Mature Secondary Structure
MKRAKPTKDKAVRDKLACKLLFLKLKDYQNILLYSPLGHELDIRLLILKLRQKNKRVWLP
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHEEHHHHCCCEEECC
KSIKKGADFSKEGFTIAPFRLPLRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVG
HHHHCCCCCCCCCCEECHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHH
FGLGMYDRSLPQLFKRRLKRPLIVFVSRELAIANGVLTDAYDIEADLYMNARIVMKNNKR
CCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCCCEECCEEEEEEEEEEEECCCH
KHYEQRVNLHFIRSLSSVFDYRSSHVLCDEKDLLC
HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA