| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527392
Identifier: 188527392
GI number: 188527392
Start: 576670
End: 577035
Strand: Direct
Name: 188527392
Synonym: HPSH_03005
Alternate gene names: NA
Gene position: 576670-577035 (Clockwise)
Preceding gene: 188527391
Following gene: 188527395
Centisome position: 35.85
GC content: 41.26
Gene sequence:
>366_bases TTGAGTGCTTTTTTGAAAGTGCCTATCATGGACGAACACCAAAAGCTTAATAAAAAATCAAAAAAGCAAACAACCCTTGA TCGCTTCCCTTGCACCTCTTGTGGGCTGTGCTGTAAGAATATCACCGGGATTGTTGAGCTTGTTGGGTTTGATGCGGGCA ATGGGGTGTGCAAGTTTTTGGATTTAGAAACCAATCTGTGCAAGATTTATGAATCCCGCCCGTTAATTTGCAGGATTGAT GAAGCGCACAAAAAGCTTTATTCTCATATCCCGCTGAAGGAGTTTTATGCCAAAAACGCAGAGGTTTGCAACGCTTTGCA AGAAGCAAACCATATGGATAAGAGCTTTAGGGTTATTGTTCAATAA
Upstream 100 bases:
>100_bases AGACGCCATCGCCACGATGAAAAAGCATAATTACGATACCTCTCGTTACAATCAAGAATAAAAAGATCAACTCAGCGTTA CGGTTTCAACGCTCTCTAGT
Downstream 100 bases:
>100_bases TATTAGAATTATTGTTCCACAAACACCGCATCAACCAAGTCTTCTATAAAGCGTTCTTCATCAAAAGCGATCAAATCGTC TTCTTTTTCGCCCATTCCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSAFLKVPIMDEHQKLNKKSKKQTTLDRFPCTSCGLCCKNITGIVELVGFDAGNGVCKFLDLETNLCKIYESRPLICRID EAHKKLYSHIPLKEFYAKNAEVCNALQEANHMDKSFRVIVQ
Sequences:
>Translated_121_residues MSAFLKVPIMDEHQKLNKKSKKQTTLDRFPCTSCGLCCKNITGIVELVGFDAGNGVCKFLDLETNLCKIYESRPLICRID EAHKKLYSHIPLKEFYAKNAEVCNALQEANHMDKSFRVIVQ >Mature_120_residues SAFLKVPIMDEHQKLNKKSKKQTTLDRFPCTSCGLCCKNITGIVELVGFDAGNGVCKFLDLETNLCKIYESRPLICRIDE AHKKLYSHIPLKEFYAKNAEVCNALQEANHMDKSFRVIVQ
Specific function: Unknown
COG id: COG0727
COG function: function code R; Predicted Fe-S-cluster oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13768; Mature: 13637
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 9.1 %Cys+Met (Translated Protein) 6.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 8.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAFLKVPIMDEHQKLNKKSKKQTTLDRFPCTSCGLCCKNITGIVELVGFDAGNGVCKFL CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE DLETNLCKIYESRPLICRIDEAHKKLYSHIPLKEFYAKNAEVCNALQEANHMDKSFRVIV ECCHHHHHHHCCCCCEEEECHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEEC Q C >Mature Secondary Structure SAFLKVPIMDEHQKLNKKSKKQTTLDRFPCTSCGLCCKNITGIVELVGFDAGNGVCKFL CCEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE DLETNLCKIYESRPLICRIDEAHKKLYSHIPLKEFYAKNAEVCNALQEANHMDKSFRVIV ECCHHHHHHHCCCCCEEEECHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEEC Q C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA