| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527382
Identifier: 188527382
GI number: 188527382
Start: 568070
End: 569161
Strand: Direct
Name: 188527382
Synonym: HPSH_02945
Alternate gene names: NA
Gene position: 568070-569161 (Clockwise)
Preceding gene: 188527381
Following gene: 188527383
Centisome position: 35.32
GC content: 44.14
Gene sequence:
>1092_bases ATGGTATCAACACTCAAACCGCTAAAAATCGGTAAGCACACCATAAAATTCCCTATCTTTCAAGGGGGAATGGGTGTGGG GATTAGCTGGGATGAACTAGCTGGAAATGTTGCCAAAGAAGGGGCTTTAGGAGTGATTTCAGCCGTAGGGACCGGTTATT ATAAAAACATGCGTTTTGTAGAAAGGATTGTGGCTAAAAAACCCTTTGAAGCCTTGAATTTTTACTCTAAAAAAGCGTTG AATGAGATTTTTGCAAACGCTAGGAAGATTTGCGGGAACAAGCCTTTGGGGGCGAATATTTTATACGCTATCAATGATTA CGGTCGTGTTTTAAGGGACGCTTGTGAAGCGGGAGCGAATATCATTATAACAGGGGCTGGCTTACCCACCAACATGCCTG AATTCGCTAAAGGTTTTAGCGATGTGGCGCTCATCCCTATTATTTCTTCAGCGAAGGCTTTAAAAATCCTTTGTAAAAGG TGGAGCGATCGGTATAAAAGAATCCCAGACGCATTTATTGTGGAAGGACCTTTGAGTGGGGGGCATCAGGGCTTTAAATA CGAAGATTGTTTCAAAGAAGAATTCCGATTAGAAAACTTAGTGCCTAAAGTCGTGGAAGCTTCTAAAGAATGGGGGAATA TCCCTATCATCGCTGCTGGGGGGATTTGGGATAGGAAGGATATAGACACCATGTTAAGTCTTGGAGCGAGTGGGGTGCAG ATGGCGACTCGTTTTTTAGGCACGAAAGAATGCGACGCTAAAGTGTATGCCGATCTTTTGCCCACGCTCAACAAAGAAGA TATTTTACTCATTAAATCGCCTGTAGGCTATCCGGCTAGGGCTATTAATACTGGGGTGATCAAGCGCATTGAAGAGGGTA ACGCGCCCAAAATCGCATGCGTGAGCAATTGTGTAGCGCCTTGTAACAGGGGTGAAGAGGCTAAAAAGGTGGGCTATTGC ATCGCTGATAGCTTGGGGCGCAGTTATTTAGGAAACAGAGAAGAGGGGCTTTATTTTACCGGGGCTAATGGCTATAGAGT GGATAAGATTATCAGCGTGCATGAATTGATTAAAGAGCTTACAGAGGGTTAA
Upstream 100 bases:
>100_bases GTGGTAAAAAATGAGAATTATCGTTTTGTTAAAGGAAATTATGTTATACAGCTTGGTAAGAAAAGATTTATGAAATTAAA TATTAACTAAGGAAAGAGCT
Downstream 100 bases:
>100_bases TTTGTAGTGCTTGTGAGGTTAGGGGTTGTTGCATGTCTTTTTTGGTTGCATTTTGCTTATGCGACAACCCTTAAAATCAT CAACATTGTGCCTTTTGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: 2-Nitropropane Dioxygenase; Enoyl-(Acyl-Carrier-Protein) Reductase II; Oxidoreductase 2-Nitropropane Dioxygenase Family; 2-Nitropropane Dioxygenase Family Oxidoreductase; Dioxygenase; 2-Nitropropane Dioxygenase-Like Protein; Oxidoreductase; Dioxygenase Related 2-Nitropropane Dioxygenase; Oxidoreductase 2-Nitropropane Dioxygenase Family Protein; Enoyl-[Acyl-Carrier Protein] Reductase; 2-Nitropropane Dioxygenase Npd; Dioxygenases Related 2-Nitropropane Dioxygenase; Enoyl-(Acyl-Carrier-Protein) Reductase; Enoyl-[Acyl-Carrier-Protein] Reductase; 2-Nitropropane Dioxygenase-Like; Trans-2-Enoyl-ACP Reductase; 2-Nitropropane Dioxygenase Family; Flavin-Containing Oxidoreductase; 2-Nitropropane Dioxygenase-Releated Protein; Enoyl-(Acyl-Carrier-Protein) Reductase FabK; 2-Nitropropane Dioxygenase Family Protein; 2-Nitropropane Dioxygenase-Like Dioxygenase
Number of amino acids: Translated: 363; Mature: 363
Protein sequence:
>363_residues MVSTLKPLKIGKHTIKFPIFQGGMGVGISWDELAGNVAKEGALGVISAVGTGYYKNMRFVERIVAKKPFEALNFYSKKAL NEIFANARKICGNKPLGANILYAINDYGRVLRDACEAGANIIITGAGLPTNMPEFAKGFSDVALIPIISSAKALKILCKR WSDRYKRIPDAFIVEGPLSGGHQGFKYEDCFKEEFRLENLVPKVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGVQ MATRFLGTKECDAKVYADLLPTLNKEDILLIKSPVGYPARAINTGVIKRIEEGNAPKIACVSNCVAPCNRGEEAKKVGYC IADSLGRSYLGNREEGLYFTGANGYRVDKIISVHELIKELTEG
Sequences:
>Translated_363_residues MVSTLKPLKIGKHTIKFPIFQGGMGVGISWDELAGNVAKEGALGVISAVGTGYYKNMRFVERIVAKKPFEALNFYSKKAL NEIFANARKICGNKPLGANILYAINDYGRVLRDACEAGANIIITGAGLPTNMPEFAKGFSDVALIPIISSAKALKILCKR WSDRYKRIPDAFIVEGPLSGGHQGFKYEDCFKEEFRLENLVPKVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGVQ MATRFLGTKECDAKVYADLLPTLNKEDILLIKSPVGYPARAINTGVIKRIEEGNAPKIACVSNCVAPCNRGEEAKKVGYC IADSLGRSYLGNREEGLYFTGANGYRVDKIISVHELIKELTEG >Mature_363_residues MVSTLKPLKIGKHTIKFPIFQGGMGVGISWDELAGNVAKEGALGVISAVGTGYYKNMRFVERIVAKKPFEALNFYSKKAL NEIFANARKICGNKPLGANILYAINDYGRVLRDACEAGANIIITGAGLPTNMPEFAKGFSDVALIPIISSAKALKILCKR WSDRYKRIPDAFIVEGPLSGGHQGFKYEDCFKEEFRLENLVPKVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGVQ MATRFLGTKECDAKVYADLLPTLNKEDILLIKSPVGYPARAINTGVIKRIEEGNAPKIACVSNCVAPCNRGEEAKKVGYC IADSLGRSYLGNREEGLYFTGANGYRVDKIISVHELIKELTEG
Specific function: Unknown
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39548; Mature: 39548
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSTLKPLKIGKHTIKFPIFQGGMGVGISWDELAGNVAKEGALGVISAVGTGYYKNMRFV CCCCCCCHHCCCEEEEEEEEECCCCCCCCHHHHHCHHHHCCCHHHHHHHHCCHHHHHHHH ERIVAKKPFEALNFYSKKALNEIFANARKICGNKPLGANILYAINDYGRVLRDACEAGAN HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCC IIITGAGLPTNMPEFAKGFSDVALIPIISSAKALKILCKRWSDRYKRIPDAFIVEGPLSG EEEECCCCCCCCHHHHCCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCC GHQGFKYEDCFKEEFRLENLVPKVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGVQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCHHH MATRFLGTKECDAKVYADLLPTLNKEDILLIKSPVGYPARAINTGVIKRIEEGNAPKIAC HHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEHH VSNCVAPCNRGEEAKKVGYCIADSLGRSYLGNREEGLYFTGANGYRVDKIISVHELIKEL HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH TEG HCC >Mature Secondary Structure MVSTLKPLKIGKHTIKFPIFQGGMGVGISWDELAGNVAKEGALGVISAVGTGYYKNMRFV CCCCCCCHHCCCEEEEEEEEECCCCCCCCHHHHHCHHHHCCCHHHHHHHHCCHHHHHHHH ERIVAKKPFEALNFYSKKALNEIFANARKICGNKPLGANILYAINDYGRVLRDACEAGAN HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCC IIITGAGLPTNMPEFAKGFSDVALIPIISSAKALKILCKRWSDRYKRIPDAFIVEGPLSG EEEECCCCCCCCHHHHCCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCC GHQGFKYEDCFKEEFRLENLVPKVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGVQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCHHH MATRFLGTKECDAKVYADLLPTLNKEDILLIKSPVGYPARAINTGVIKRIEEGNAPKIAC HHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEHH VSNCVAPCNRGEEAKKVGYCIADSLGRSYLGNREEGLYFTGANGYRVDKIISVHELIKEL HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH TEG HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA