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The map label for this gene is 188527367

Identifier: 188527367

GI number: 188527367

Start: 549367

End: 550866

Strand: Reverse

Name: 188527367

Synonym: HPSH_02870

Alternate gene names: NA

Gene position: 550866-549367 (Counterclockwise)

Preceding gene: 188527368

Following gene: 188527350

Centisome position: 34.25

GC content: 41.8

Gene sequence:

>1500_bases
ATGAACTATAAAGTTGCATCTGCTAAAAATATCGCAACGCTTCTTTTTTTATTCTCTTCTCAAAGTCAAGCTTTTGATTT
GGGTAAAATCGCTAAAATTAAAGCGGGTGCTGAAAGTTTCTCTAAAGTCGGTTTCAATAACAAACCTATCAACACTAATA
AAGGGCTTTACCCTACCGAAACCTTTATGACGGTTATGGCTTACATGCAAGTAGATTTTACGGAACTCTTGCCCAAAAGC
GCTACGGCTAACGGGCATCATTTAGATGGGAGTCTTGGGGGTTGGGGGGGTGCTGTTATTTATGATAGCACTAAGGATTT
CATTAACGAAGTTACAGGAAAGCCCTATGGGGCTATGACATGGAACTATGTGGGTTATTGGGGCGGTCTTGTAGGGCAAA
AACCATGGGCTAGTTGTGGGTTAGCCACTGGGAATTTGACCCAAGGCCAATACGATAAGATGACTCAAGCCCAAATGACA
CAATTGTCCAATCAAGAGGCTTTAGAGGCTTCCACTTGCGCAAAATCTTATGCCGATCACACCAGAAACTATGTGATTTA
TAACGCTTACTTGCGCTACAACTACAAAGATATTTTTCAAATTAGGGGCGGAAGATACGAATCCCCAGCGGATTATATGA
GTGGTTACAACCAAGGCTTGGACATGACCTTAAACTTAGGGAATTTCAAATTCTGGTGGTTTAGCTCTTTTGGTCGTGGT
TTTGCCTATAATGAGTGGCTTTATAATTTCTATTCGCCTAAAACCTACACTCTTAAAAACGGGCAAACCATAAACCCTGG
GGTGCATGCCTTTTATATCATTTGGAATTACAAGGGTTGGAGCATTCAGCCTTTTGTCTATTTTTCACCCTTTAACGAAT
ACGACCCTAACTTTACGATCACTTATGATAGTAACCCCACTTTTACCGGATTAGGGTTTCGCTCTCAAACAGATGTTACC
GTGCTTAATCCTTTTTATGCTAAAAGGTTTTGGGACACCTATCAATTTGGCATGCCAGCCGGTAAGAATGCACACAGCTT
GATGATCAAACAAAAGTTTGAATGGAATGAATACAATTTTGGTTTTGGGATTTATAAATCCTTTGGGAACGCTAACTGGA
TGATAGGCTACCATGGTAACCGCTTAGGCTTTGACTTTTGGACGAACACTGTTTATGCAAACACCCTTAACTCTTTGTCT
TACATGATGGATGCGAACGCTTTTACCGTGTTTGCCTTTGGCGGTGGGGTGCATAGGAAACTCCTTTGGGGCTTATTGGG
GCGTTTGACCTATGGGCCTAGGGCGAACGAACAAGTCCTATCGCTCAACTTGGGCTATAAATTCACTAAAAATTTCTCAG
CCGACATTAAATTTGAATATTATAATGTGCTGATGCATCAAGGCTATAAAATGGGGTGGAACGGGCCAAAATTGGACAGC
CAGCCTGCCACCGATCAAGACAGGAGCCATATTTTCACCGAGATAGTGTGGAAGCTTTAA

Upstream 100 bases:

>100_bases
AACAGACTGATTAGACTCTCAAGATCTGTAAGAAAAAATTTTCTTTGAATGGTGTTGGCTTACTCTATTTAGAATTTTTT
GTTTATACTAAGGGCTAAAT

Downstream 100 bases:

>100_bases
GCCCTCTTCAAATAACAACCCTTTAAAAGGGGTTGTTAAAACGCCTAAGAAATCAGCCAAAAAACGCTTTATCGCCTATT
TTAGGGCTTGTTTTTAAAAA

Product: outer membrane protein HofF

Products: NA

Alternate protein names: Outer Membrane Protein; Hof Family Outer Membrane Protein; Outer Membrane Protein HofH; Outer Membrane Protein HofF; Outer Membrane Protein HofA; Outer Membrane Protein HofC; Outer Membrane Protein HofB; Outer Membrane Protein HofD; Outermembrane Protein HofE

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MNYKVASAKNIATLLFLFSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTVMAYMQVDFTELLPKS
ATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKPYGAMTWNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAQMT
QLSNQEALEASTCAKSYADHTRNYVIYNAYLRYNYKDIFQIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG
FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYIIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLGFRSQTDVT
VLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLS
YMMDANAFTVFAFGGGVHRKLLWGLLGRLTYGPRANEQVLSLNLGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS
QPATDQDRSHIFTEIVWKL

Sequences:

>Translated_499_residues
MNYKVASAKNIATLLFLFSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTVMAYMQVDFTELLPKS
ATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKPYGAMTWNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAQMT
QLSNQEALEASTCAKSYADHTRNYVIYNAYLRYNYKDIFQIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG
FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYIIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLGFRSQTDVT
VLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLS
YMMDANAFTVFAFGGGVHRKLLWGLLGRLTYGPRANEQVLSLNLGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS
QPATDQDRSHIFTEIVWKL
>Mature_499_residues
MNYKVASAKNIATLLFLFSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTVMAYMQVDFTELLPKS
ATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKPYGAMTWNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAQMT
QLSNQEALEASTCAKSYADHTRNYVIYNAYLRYNYKDIFQIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG
FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYIIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLGFRSQTDVT
VLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLS
YMMDANAFTVFAFGGGVHRKLLWGLLGRLTYGPRANEQVLSLNLGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS
QPATDQDRSHIFTEIVWKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57005; Mature: 57005

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKVASAKNIATLLFLFSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTE
CCEECCCCCCCEEEEEEECCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCCHH
TFMTVMAYMQVDFTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKPYGAMT
HHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCEE
WNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAQMTQLSNQEALEASTCAKSYADH
ECCHHHHCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
TRNYVIYNAYLRYNYKDIFQIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG
CCCEEEEEEEEEECCHHEEEECCCCCCCCHHHHHCCCCCCEEEEECCCEEEEEECCCCCC
FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYIIWNYKGWSIQPFVYFSPFNEYDPNFTI
CEEHHHHHHCCCCEEEEECCCCEECCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCEEE
TYDSNPTFTGLGFRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNF
EECCCCCEEECCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCC
GFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRK
CCHHHHHCCCCEEEEEECCCEEEEEHHCCEEEEHHHHHHHHHCCCCEEEEEEECCCHHHH
LLWGLLGRLTYGPRANEQVLSLNLGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS
HHHHHHHHCCCCCCCCCEEEEEECCEEEECCCCCEEEEHHHHHHHHCCEEECCCCCCCCC
QPATDQDRSHIFTEIVWKL
CCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNYKVASAKNIATLLFLFSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTE
CCEECCCCCCCEEEEEEECCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCCHH
TFMTVMAYMQVDFTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKPYGAMT
HHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCEE
WNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAQMTQLSNQEALEASTCAKSYADH
ECCHHHHCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
TRNYVIYNAYLRYNYKDIFQIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG
CCCEEEEEEEEEECCHHEEEECCCCCCCCHHHHHCCCCCCEEEEECCCEEEEEECCCCCC
FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYIIWNYKGWSIQPFVYFSPFNEYDPNFTI
CEEHHHHHHCCCCEEEEECCCCEECCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCEEE
TYDSNPTFTGLGFRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNF
EECCCCCEEECCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCC
GFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRK
CCHHHHHCCCCEEEEEECCCEEEEEHHCCEEEEHHHHHHHHHCCCCEEEEEEECCCHHHH
LLWGLLGRLTYGPRANEQVLSLNLGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS
HHHHHHHHCCCCCCCCCEEEEEECCEEEECCCCCEEEEHHHHHHHHCCEEECCCCCCCCC
QPATDQDRSHIFTEIVWKL
CCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA