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The map label for this gene is rbpE [H]

Identifier: 188527327

GI number: 188527327

Start: 517470

End: 517718

Strand: Direct

Name: rbpE [H]

Synonym: HPSH_02670

Alternate gene names: 188527327

Gene position: 517470-517718 (Clockwise)

Preceding gene: 188527325

Following gene: 188527335

Centisome position: 32.17

GC content: 36.55

Gene sequence:

>249_bases
TTGAAAAACATTTATGTAGGGAATTTGGTTTATAGTGCTACCAGCGAGCAAGTCAAGGAGCTTTTCAGTCAATTTGGCAA
AGTTTTTAATGTCAAGCTGATTTATGACAGAGAAACGAAGAAACCTAAAGGTTTTGGCTTTGTAGAAATGCAAGAAGAGG
GCGTTAGTGAAGCGATTGCTAAATTAGACAATACGGATTTTATGGGCAGAACGATTAGGGTAACTGAAGCTAATCCTAAA
AAGTTTTAG

Upstream 100 bases:

>100_bases
TTCTGTTTTGGATGTGTTTGGGTTTTAGAAGTGTTACTTTTTTATAACTTTTTCATATTCTTATGGGTATGTTGTCATTT
TTTTACCGGAGAATTTTATC

Downstream 100 bases:

>100_bases
TAGCATTAGAAAATAATTTTCTAATGCGCTTCCATTCTCTTAATGCGTTTTAACTGCACATAGAAGCTAAAAGGGGTAAA
ACCCTTTTAAAATCCATTTA

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MKNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGVSEAIAKLDNTDFMGRTIRVTEANPK
KF

Sequences:

>Translated_82_residues
MKNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGVSEAIAKLDNTDFMGRTIRVTEANPK
KF
>Mature_82_residues
MKNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGVSEAIAKLDNTDFMGRTIRVTEANPK
KF

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=45.1219512195122, Blast_Score=84, Evalue=3e-17,
Organism=Homo sapiens, GI4557493, Length=82, Percent_Identity=45.1219512195122, Blast_Score=83, Evalue=4e-17,
Organism=Homo sapiens, GI4505255, Length=80, Percent_Identity=35, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=46.0526315789474, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=40.2597402597403, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=75, Percent_Identity=42.6666666666667, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=37.6623376623377, Blast_Score=69, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=45.1219512195122, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9388; Mature: 9388

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGVSEAIA
CCCEEECCEEECCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEECCCCHHHHHH
KLDNTDFMGRTIRVTEANPKKF
HCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MKNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGVSEAIA
CCCEEECCEEECCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEECCCCHHHHHH
KLDNTDFMGRTIRVTEANPKKF
HCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]