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The map label for this gene is fliR

Identifier: 188526977

GI number: 188526977

Start: 164700

End: 165467

Strand: Reverse

Name: fliR

Synonym: HPSH_00870

Alternate gene names: 188526977

Gene position: 165467-164700 (Counterclockwise)

Preceding gene: 188526978

Following gene: 188526976

Centisome position: 10.29

GC content: 41.54

Gene sequence:

>768_bases
ATGCTAGATTTTATTCAAGAGCTTAGCACCCCCCATGTTAGGGATTTTTTCTTGTTGTTTTTAAGGGTTAGTGGCGTGCT
GTCTTTTTTCCCTTTTTTTGAAAACCATTTAGTGCCTTTGTCGGTGCGTGGGGCTTTGAGCTTGTATGTGAGCGCGATTT
TTTACCCCACTTTAGAATTTTCAAACGCCGCTTACACGCCAGAGGGTTTTATTATTGCTTGCTTGTGCGAGCTGTTTTTA
GGGGTGTGCGCGTCTATCTTTTTGCAAATCGTCTTTGCAAGCTTGGTGTTTGCAACCGATAGCATCAGCTTTTCTATGGG
GCTTACGATGGCGAGTGCGTATGATCCTATTTCAGGATCGCAAAAACCCATTGTAGGGCAAGCCCTTTTATTGTTAGCGA
TTTTAATTTTATTGGATTTATCGTTCCACCATCAAATCATTTTGTTTGTGGATCACAGCTTAAAAGCCGTCCCTTTAGGG
CAATTTGTCTTTGAGCCAGCGTTAGCTAAAAACATTGTCAAAGCCTTTTCGCACTTGTTTGTCATAGGGTTTTCTATGGC
GTTCCCTATTTTATGCTTGGTGTTATTGAGCGATATTATTTTTGGCATGATCATGAAAACCCACCCTCAGTTCAACCTGC
TTGCGATCGGGTTTCCGGTTAAAATTGCGATCGGGTTTGTGGGCATTATCTTAATCATTTCAGCTATCATGGGGCGTTTT
AAAGAAGAAATCAGCCTGGCCTTTAGCACCATTAGCAAAATCTTTTAA

Upstream 100 bases:

>100_bases
TTTTGCTATCTTTTTTCCTTAATCCCTTTTTTTAATTTTTTTGCCACTTTATTGCAAACCCTAATGCTAACGCACTACTT
TTTTATCCTTAAGAAAAAGA

Downstream 100 bases:

>100_bases
AGGATCAATATGGTTAGTTTTAAAGAAGCTCTAAAAATCCATTCTAGCATTCCCCTAGAACCCTTAGAAATAGAGATTAT
TTCTTTGTTTGAAAGCATAG

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEGFIIACLCELFL
GVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLG
QFVFEPALAKNIVKAFSHLFVIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRF
KEEISLAFSTISKIF

Sequences:

>Translated_255_residues
MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEGFIIACLCELFL
GVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLG
QFVFEPALAKNIVKAFSHLFVIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRF
KEEISLAFSTISKIF
>Mature_255_residues
MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEGFIIACLCELFL
GVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLG
QFVFEPALAKNIVKAFSHLFVIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRF
KEEISLAFSTISKIF

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28100; Mature: 28100

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEF
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHCC
SNAAYTPEGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
QKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLF
CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
KEEISLAFSTISKIF
HHHHHHHHHHHHHHC
>Mature Secondary Structure
MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEF
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHCC
SNAAYTPEGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
QKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLF
CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
KEEISLAFSTISKIF
HHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]