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The map label for this gene is ykgF [H]

Identifier: 188526942

GI number: 188526942

Start: 132925

End: 134370

Strand: Reverse

Name: ykgF [H]

Synonym: HPSH_00695

Alternate gene names: 188526942

Gene position: 134370-132925 (Counterclockwise)

Preceding gene: 188526943

Following gene: 188526941

Centisome position: 8.35

GC content: 43.15

Gene sequence:

>1446_bases
ATGGAAAAATATCATAGCGACCAAGAATACGAAGAAATCATCACCGACCAATTGGGCGATAGGCAATTAAGGGAAAATTT
GCGTTCTGCAATGGATACCTTAAGGGCTAATCGTAAGAATTTGATTAAAAATCGTTACAGCGAATGGGAAAATTTAAGGG
AATTAGGCAAAGAAGTCAAGCTTAAAATTTTATCCAGGCTTGATGAGTATTTGGAATTGTTTGAAAAAAACGCCACTCAA
AACGGCTTTAAAATCCATTACGCTAAAGACGGTGATGAAGCTAATGAAATCATTTACAACCTCGCTAAAGAAAAGAATAT
CAAGCGCATTTTAAAGCAAAAGTCCATGGCGAGCGAAGAAATTGGCTTGAACCATTACCTCAAAGAAAAGGGCATTCAAG
CGCAAGAAACGGATTTGGGCGAATTGATTATCCAGCTCATTAATGAACACCCTGTGCATATTGTCGTGCCAGCTATCCAT
AAAAACCGCAAGCAAATCGGTAGGATTTTTGAAGAAAAACTCAACGCCGCTTATGAAGAAGAGCCTGAAAAGCTTAATGC
GATCGCCAGAAAACACATGCGCAAAGAATTTGAAAGCTTTAAAATGGGGATTAGTGGGGTGAATTTCGCTATCGCTAATG
AGGGTGCGATCTGGTTAGTGGAAAATGAAGGCAATGGCCGCATGAGCACCACCGCATGCGATGTGCATGTCGCTATTTGC
GGGATTGAAAAATTAGTAGAAAGCTTTGATGATGCGGCGATTTTAAACAATCTGCTCGCTCCAAGCGCTGTGGGTGTGCC
TATCACATGCTATCAAAACATTATCACAGGCCCCAGAAAAGAGGGCGATTTAGACGGCCCTAAAGAAGCCCACATCATTT
TATTAGACAACAACCGCTCTAATATTTTGGCTGATGAAAAGTATTATCGCGCTCTTTCATGTATTCGTTGCGGGACTTGT
TTGAACCACTGCCCCGTGTATGACAAAATCGGTGGGCATGCCTATCTTTCTACTTATCCTGGCCCTATAGGCGTGGTGGT
ATCCCCCCAACTCTTTGGCCTGAATAATTACGGGCATATCCCCAATTTGTGCAGTCTTTGCGGGCGTTGCACTGAAGTGT
GCCCTGTAGAAATCCCTCTAGCCGAGCTTATTAGAGATTTACGATCGGATAAAGTGGGCGAGGGTAGGGGCGTAGTTAAG
GGGGCTAAAAGCACCCAACACAGTGGGATGGAAAAATTCTCTATGAAAATGTTTGCCAAAATGGCAAGCGATGGGGCTAA
GTGGCGTTTCCAATTGAAAATGGCTCAATTTTTCTCGCCTTTAGGCAAGCTTTTAGCTCCCATACTGCCTTTAGTCAAAG
AGTGGGCGAGCGTGAGAACCTTACCCAATATGGACACAAGCTTGCATGCAAAAGTCCAGCATTTAGAAGGGGTGATTTAT
GAGTAA

Upstream 100 bases:

>100_bases
ATGCAAAAAATGGGCTCTCCCACAAAACCCATGCATTTTTATGACTTTTTAGCCTCAAGGCTTGGGCTTTAACATTAAAG
AATTATTTTAAGGAATAATC

Downstream 100 bases:

>100_bases
AGAGCTTATTTTGAACCGCATTAAAGAAGCCAGAGCCAAGCATGCCATTCAGGGAGCAAACCCTGCTTACAGGAATATCA
TTAAAGTGGAGTTTGAAGAC

Product: conserved hypothetical iron-sulfur protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MEKYHSDQEYEEIITDQLGDRQLRENLRSAMDTLRANRKNLIKNRYSEWENLRELGKEVKLKILSRLDEYLELFEKNATQ
NGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIH
KNRKQIGRIFEEKLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKYYRALSCIRCGTC
LNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVVK
GAKSTQHSGMEKFSMKMFAKMASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
E

Sequences:

>Translated_481_residues
MEKYHSDQEYEEIITDQLGDRQLRENLRSAMDTLRANRKNLIKNRYSEWENLRELGKEVKLKILSRLDEYLELFEKNATQ
NGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIH
KNRKQIGRIFEEKLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKYYRALSCIRCGTC
LNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVVK
GAKSTQHSGMEKFSMKMFAKMASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
E
>Mature_481_residues
MEKYHSDQEYEEIITDQLGDRQLRENLRSAMDTLRANRKNLIKNRYSEWENLRELGKEVKLKILSRLDEYLELFEKNATQ
NGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIH
KNRKQIGRIFEEKLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKYYRALSCIRCGTC
LNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVVK
GAKSTQHSGMEKFSMKMFAKMASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
E

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=465, Percent_Identity=40.2150537634409, Blast_Score=367, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 54276; Mature: 54276

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKYHSDQEYEEIITDQLGDRQLRENLRSAMDTLRANRKNLIKNRYSEWENLRELGKEVK
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEE
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGRIFEEKLNAAYEE
HCHHHHHHHCCCCCHHCCHHHHHHHHHCCCCCEEEECCHHCCHHHHHHHHHHHHHHHHHC
EPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCEEEEHHHHHHHHH
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRS
HHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
NILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHI
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCEECCCCCCCC
PNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVVKGAKSTQHSGMEKFSMKMFAK
CHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHH
MASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
HHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
E
C
>Mature Secondary Structure
MEKYHSDQEYEEIITDQLGDRQLRENLRSAMDTLRANRKNLIKNRYSEWENLRELGKEVK
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEE
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGRIFEEKLNAAYEE
HCHHHHHHHCCCCCHHCCHHHHHHHHHCCCCCEEEECCHHCCHHHHHHHHHHHHHHHHHC
EPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCEEEEHHHHHHHHH
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRS
HHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
NILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHI
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCEECCCCCCCC
PNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVVKGAKSTQHSGMEKFSMKMFAK
CHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHH
MASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
HHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]