| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is ppsA [H]
Identifier: 188526924
GI number: 188526924
Start: 117391
End: 119829
Strand: Reverse
Name: ppsA [H]
Synonym: HPSH_00605
Alternate gene names: 188526924
Gene position: 119829-117391 (Counterclockwise)
Preceding gene: 188526935
Following gene: 188526923
Centisome position: 7.45
GC content: 42.31
Gene sequence:
>2439_bases GTGCGATATATCAAGTTTTTCAAAGAGTTGAACAATAAGAATGTGAATCTGGTTGGGGGCAAGAACGCTAGCATTGGTGA AATGTTTCAAGAATTAGTGCCTATTGGCATTAAAGTGCCTGATGGCTTTGCGATCACAAGCGAAGCGTATTGGTATCTTT TAGAGCAAGGGGGGGCTAAACAAAAAATCATAGAGCTTTTAGAAAATGTTGATGCCACGGAAATTGACGTGTTAAAAATC CGCTCCAAACAAATCAGAGAGCTTATTTTTGGCACGCCTTTTCCTAGCGATTTAAGAGATGAGATTTTTCAAGCTTATGA AATTTTAAGCCAGCAATACCACATGAAAGAAGCCGATGTGGCCGTAAGAAGCTCCGCTACCGCAGAAGATTTGCCGGACG CTTCTTTTGCCGGGCAGCAAGACACTTATTTAAACATTAAGGGTAAAACAGAATTGATCCACTATATCAAATCCTGTTTA GCGTCGCTTTTTACCGATAGAGCGATTAGTTATAGAGCGAGTCGTGGGTTTGATCATTTAAAAGTCGCCTTGAGCGTGGG GGTGCAAAAAATGGTGCGAGCGGATAAAGGCAGCGCGGGCGTGATGTTTTCTATTGACACCGAAACCGGTTTTAAAGACG CGGTGTTTATCACTTCAGCGTGGGGGTTAGGCGAAAATGTGGTGGGCGGCACGATAAACCCTGATGAATTTTATGTGTTT AAGCCCACTTTAGAGCAAAACAAACGCCCCATTATCAAACGCCAACTCGGCAATAAAACGCAAAAAATGGTCTATGCCCC AAGAGGTAGCGAACACCCCACCAGAAACATTAAAACCACCAAAAAAGAATGGCAATCCTTTTCATTGAGCGATGAAGATG TGCTGATTTTAGCCAAATACGCCATTGAGATTGAAAAACATTACTCTAAAGAAGCCAAACAATACCGCCCTATGGATATA GAATGGGCTAAAGATGGCGATAGCGGGGAAATCTTTATCGTTCAAGCGCGCCCAGAAACCGTTCAAAGCCAAAAAACCAA AGAAGAAAGTCAAGTCTTTGAAAAATTCAAATTCAAAAACCCTAACGAAAAGAAAGAGATCATCTTACAAGGCAGAGCGA TTGGGAGTAAAATTGGCTCAGGAAAAGTGCGCATCATCAATGATTTGGAGCACATGAATTCTTTTAAAGAGGGCGAAATT TTAGTTACGGATAACACCGACCCAGATTGGGAGCCTTGCATGAAAAAAGCGAGCGCGGTTATCACTAATCGTGGAGGGCG CACTTGCCATGCCGCTATTGTGGCTAGAGAAATTGGCGTGCCAGCTATTGTTGGGGTGAGCGGGGCGACTGATAGCCTTT ATACCGGCATGGAAATCACGGTTTCTTGCGCTGAGGGTGAAGAGGGCTATGTGTATGCGGGCGTTTATGAGCATGAAATT GAAAGGGTGGAGCTTTCTAACATGCAAGAAACTCAAACAAAAATTTACATCAATATTGGAAACCCTGAAAAAGCCTTTGG CTTTTCTCAGCTCCCTAATCACGGCGTAGGGCTAGCTAGAATGGAAATGATTATTTTAAATCAAATCAAAGCTCACCCCT TAGCCTTAGTGGATTTGCACCACAAAAAAAGCGTGAAAGAAAAAAATGAAATTGAAAACCTTATGGCAGGCTATGCTAAC CCTAAAGATTTTTTTGTGAAAAAAATCGCTGAAGGCATTGGCATGATCAGTGCAGCGTTTTACCCTAAACCTGTCATTGT GAGAACGAGCGATTTCAAATCCAATGAATACATGCGCATGCTTGGCGGCTCTAGCTATGAGCCTAATGAAGAAAACCCCA TGCTTGGCTATAGGGGGGCTAGTCGGTATTATTCAGAGAGCTATAATGAAGCGTTTTCGTGGGAGTGTGAAGCTTTAGCG TTAGTGAGGGAAGAAATGGGCTTGACGAACATGAAAGTGATGATCCCTTTTTTGCGAACCATTGAAGAGGGTAAAAAAGT CCTAGAAATCTTAAGAAAAAACAATCTAGAATCCGGTAAAAACGGGCTTGAAATTTATATCATGTGCGAATTACCGGTGA ATGTCATTTTGGCTGATGATTTCTTAAGCTTGTTTGATGGCTTTTCTATTGGCTCTAATGATTTAACCCAGCTCACTTTA GGCGTGGATAGAGACAGCGAATTAGTCAGCCATGTCTTTGATGAAAGGAATGAAGCGATGCTAAAAATGTTTAAAAAAGC GATTGAAGCTTGCAAAAGGCACAACAAATATTGCGGGATTTGCGGGCAAGCCCCAAGCGATTACCCTGAAGTAACAGAGT TTTTAGTCAAAGAGGGCATCACTTCCATTTCTTTAAACCCTGATAGCGTGATCCCCACTTGGAACGCTGTAGCCAAGTTA GAAAAAGAATTGAAAGACCATGGCTTAACTGCGCATTGA
Upstream 100 bases:
>100_bases AAAGCTCAGTAATACAAACTAGCTAAAACTAAAGCTCTATCATGCTATCATTAATATATTTTTGTTTTAAGAAACTTAAT GATAATTTTAAGGGAGTTTT
Downstream 100 bases:
>100_bases TAATGAAGGGGTTGATCTAACTTGAGTGGATTTTTTCGTATTAGTTTCCACAGATTTAATTTTGATGGGTAAGATTGTTT TTTGAAAAAAAGGGTGGTAA
Product: phosphoenolpyruvate synthase
Products: NA
Alternate protein names: PEP synthase; Pyruvate, water dikinase [H]
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAKQKIIELLENVDATEIDVLKI RSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYHMKEADVAVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCL ASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEFYVF KPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDI EWAKDGDSGEIFIVQARPETVQSQKTKEESQVFEKFKFKNPNEKKEIILQGRAIGSKIGSGKVRIINDLEHMNSFKEGEI LVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSGATDSLYTGMEITVSCAEGEEGYVYAGVYEHEI ERVELSNMQETQTKIYINIGNPEKAFGFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEKNEIENLMAGYAN PKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEPNEENPMLGYRGASRYYSESYNEAFSWECEALA LVREEMGLTNMKVMIPFLRTIEEGKKVLEILRKNNLESGKNGLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTL GVDRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKL EKELKDHGLTAH
Sequences:
>Translated_812_residues MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAKQKIIELLENVDATEIDVLKI RSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYHMKEADVAVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCL ASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEFYVF KPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDI EWAKDGDSGEIFIVQARPETVQSQKTKEESQVFEKFKFKNPNEKKEIILQGRAIGSKIGSGKVRIINDLEHMNSFKEGEI LVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSGATDSLYTGMEITVSCAEGEEGYVYAGVYEHEI ERVELSNMQETQTKIYINIGNPEKAFGFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEKNEIENLMAGYAN PKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEPNEENPMLGYRGASRYYSESYNEAFSWECEALA LVREEMGLTNMKVMIPFLRTIEEGKKVLEILRKNNLESGKNGLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTL GVDRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKL EKELKDHGLTAH >Mature_812_residues MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAKQKIIELLENVDATEIDVLKI RSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYHMKEADVAVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCL ASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEFYVF KPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDI EWAKDGDSGEIFIVQARPETVQSQKTKEESQVFEKFKFKNPNEKKEIILQGRAIGSKIGSGKVRIINDLEHMNSFKEGEI LVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSGATDSLYTGMEITVSCAEGEEGYVYAGVYEHEI ERVELSNMQETQTKIYINIGNPEKAFGFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEKNEIENLMAGYAN PKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEPNEENPMLGYRGASRYYSESYNEAFSWECEALA LVREEMGLTNMKVMIPFLRTIEEGKKVLEILRKNNLESGKNGLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTL GVDRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKL EKELKDHGLTAH
Specific function: Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1787994, Length=800, Percent_Identity=52.5, Blast_Score=872, Evalue=0.0, Organism=Escherichia coli, GI1788756, Length=428, Percent_Identity=26.8691588785047, Blast_Score=122, Evalue=1e-28, Organism=Escherichia coli, GI48994992, Length=373, Percent_Identity=28.1501340482574, Blast_Score=108, Evalue=2e-24, Organism=Escherichia coli, GI1788726, Length=376, Percent_Identity=25.2659574468085, Blast_Score=97, Evalue=4e-21, Organism=Escherichia coli, GI1789193, Length=426, Percent_Identity=23.943661971831, Blast_Score=93, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17564524, Length=239, Percent_Identity=27.6150627615063, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR006318 - InterPro: IPR006319 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.2 [H]
Molecular weight: Translated: 91188; Mature: 91188
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAK CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEECCCCEEECCCCEEEEEECCCCH QKIIELLENVDATEIDVLKIRSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYHMKEADV HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH AVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCLASLFTDRAISYRASRGFDHL HHHCCCCHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH KVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEFYVF HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE KPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKY CCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEHH AIEIEKHYSKEAKQYRPMDIEWAKDGDSGEIFIVQARPETVQSQKTKEESQVFEKFKFKN HHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCC PNEKKEIILQGRAIGSKIGSGKVRIINDLEHMNSFKEGEILVTDNTDPDWEPCMKKASAV CCCCHHEEEECCHHCCCCCCCCEEEEECHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH ITNRGGRTCHAAIVAREIGVPAIVGVSGATDSLYTGMEITVSCAEGEEGYVYAGVYEHEI EECCCCCEEHHHHHHHHCCCCEEEECCCCCCHHCCCEEEEEEECCCCCCEEEEEEEHHHH ERVELSNMQETQTKIYINIGNPEKAFGFSQLPNHGVGLARMEMIILNQIKAHPLALVDLH HHHHHCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEH HKKSVKEKNEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRM HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH LGGSSYEPNEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRT HCCCCCCCCCCCCCEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH IEEGKKVLEILRKNNLESGKNGLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTL HHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEHHHHHHHHCCCCCCCCCCEEEEE GVDRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGI ECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCC TSISLNPDSVIPTWNAVAKLEKELKDHGLTAH CEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAK CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEECCCCEEECCCCEEEEEECCCCH QKIIELLENVDATEIDVLKIRSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYHMKEADV HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH AVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCLASLFTDRAISYRASRGFDHL HHHCCCCHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH KVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEFYVF HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE KPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKY CCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEHH AIEIEKHYSKEAKQYRPMDIEWAKDGDSGEIFIVQARPETVQSQKTKEESQVFEKFKFKN HHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCC PNEKKEIILQGRAIGSKIGSGKVRIINDLEHMNSFKEGEILVTDNTDPDWEPCMKKASAV CCCCHHEEEECCHHCCCCCCCCEEEEECHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH ITNRGGRTCHAAIVAREIGVPAIVGVSGATDSLYTGMEITVSCAEGEEGYVYAGVYEHEI EECCCCCEEHHHHHHHHCCCCEEEECCCCCCHHCCCEEEEEEECCCCCCEEEEEEEHHHH ERVELSNMQETQTKIYINIGNPEKAFGFSQLPNHGVGLARMEMIILNQIKAHPLALVDLH HHHHHCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEH HKKSVKEKNEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRM HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH LGGSSYEPNEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRT HCCCCCCCCCCCCCEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH IEEGKKVLEILRKNNLESGKNGLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTL HHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEHHHHHHHHCCCCCCCCCCEEEEE GVDRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGI ECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCC TSISLNPDSVIPTWNAVAKLEKELKDHGLTAH CEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]