Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188526886

Identifier: 188526886

GI number: 188526886

Start: 71672

End: 73459

Strand: Direct

Name: 188526886

Synonym: HPSH_00390

Alternate gene names: NA

Gene position: 71672-73459 (Clockwise)

Preceding gene: 188526885

Following gene: 188526887

Centisome position: 4.46

GC content: 42.17

Gene sequence:

>1788_bases
ATGAAAGCTATAAAAGTACTTTTTATGATGACACTCAGTTTAAACGCTATTAGCGTGAATAGGGCGTTGTTTGACTTAAA
AGATTCGCAATTAAAAGGGGAATTAACGCCAAAAATAGTGAATTTTGGGGGTTATAAAAGCAGCACCACAGAGTGGGGAG
CTACGGCTTTAAACTATATCAATGCGGCTAATGGCGATGCGAAAAAATTCAGTGCGTTAGTGGAAAAAATGCGTTTTGGC
TCTGGCATCTTGGGGAATTTAAGAGCGCATGCGCATTTAAGGCAAGCCCTAAAATTGCAAAAGAATTTGAAATATTGCCT
TAAAATCATCGCTAGGGATTCTTTTTATAGTTACCGCACCGGTATTTATATCCCCTTAGGCATTTCTTTAAAAGATCAAA
AAACGGCTCAAAAAATGCTCGCTGATTTGAGCGTGGTAGGGGCGTATCTCAAACAACAACAAGAGAATGAAAAGGCTCAA
AGCCCTTATTACAGGAGCAACAACTATTACAACTCTTACTATAGCCCTTATTATGGGATGTATGGAATGGGCATGTATGG
AATGGGCATGTATGGCATGTATGGCATGGGCATGTATGATTTTTATGACTTTTATGATGGCATGTATGGATTCTACCCTA
ACATGTTTTTCATGATGCAAGTTCAAGATTACTTGATGTTAGAAAATTATATGTATGCGATCGATCAAGAAGAGATTTTA
GACCATGACGCTTCTATTAATCAACTTGATACGCCTACTGATGATGACAGAGATGATAAGGACGATAAACCCTTACAGCA
GGCTAATCTCATGAGCTTTTATCGTGATCCCAAATTCAGCAAAGGCATTCAAACCAACCGCTTGAATAGCGCTTTAGTCA
ATTTAGACAACAGCCGCATGCTCAAAGACAATTCGCTTTTCCACACTAAAGCCATGCCCACTAAAAGCGTGGATGCGATA
ACTTCTCAAGCCAAAGAGCTTAACCATTTAGTGGGGCAAATCAAAGAAATGAAGCAAGACGGGGCGAGTCCTAGTAAGAT
TGATTCAGTTGTCAATAAAGCTATGGAAGTGAGGGATAAATTAGACAATAACTTAAACCAGCTAGACAATGACTTAAAAG
ATCAAAAAGGGCTTTCAAGCGAGCAACAAGCTCAAGTGGATAAGGCTCTAGACAGCGTGCAACAATTAAGCCATAGTAGC
GATGTGGTGGGGAATTATTTAGACGGGAGTTTGAAAATTGATGGCGATGATAGAGATGATTTGAATGATGCGATGGATAA
CCCCATGCAACAACCCGTGCAACAAACGCCCACCAACAACATGGGCAACACCCATGCAAATGATAGCAAGGATCAAGGGG
GTAACGCGCTCATAAACCCTAACAGCACCACTAACACCGATGACACTCACACCGACGATACTCACACTGACACTAACACC
ACAAACGATACCAGTGCCACTGACACCCCCACTGATGATAAAGATGCTAGCGATATGAACAATACCGGCGATATGAATAA
TACCGATACCGGCAACACGGACACCGGCAATACTGATACCGGTAACACTGATGATGCGAGCAACATGAACAACGGCAACG
ATGATATGGGTAACGCTAATGACGACATGAGCAACGGCAACGACATGGGCGATGACATGAACAACGCGAACGACATGAAC
GATGACATGGGTAATAGCAACAATGACATGGGCGATATGGGGGATATGAACGATGATATGGGTGGCGATATGGGAGACAT
GGGGGATATGGGCGATATGGGGAATTGA

Upstream 100 bases:

>100_bases
TTTTTAGGTTTTATTTTTTACTTTGGCTTGTTTTTAAAAGTCATTTTGATTTCTAAAAATAGTCTATAATGCTTTCAACA
GATATTTTTTAAGGTTATAA

Downstream 100 bases:

>100_bases
GATTAACCCCAAGAATATCAAAGAGTGATAGCTAAAATTTTAAGGAATATTCTTATCCCACAAGCACGAAAAACTCCGTC
CTTTAGGACGCAAGATGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 595; Mature: 595

Protein sequence:

>595_residues
MKAIKVLFMMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYKSSTTEWGATALNYINAANGDAKKFSALVEKMRFG
SGILGNLRAHAHLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKQQQENEKAQ
SPYYRSNNYYNSYYSPYYGMYGMGMYGMGMYGMYGMGMYDFYDFYDGMYGFYPNMFFMMQVQDYLMLENYMYAIDQEEIL
DHDASINQLDTPTDDDRDDKDDKPLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAI
TSQAKELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSS
DVVGNYLDGSLKIDGDDRDDLNDAMDNPMQQPVQQTPTNNMGNTHANDSKDQGGNALINPNSTTNTDDTHTDDTHTDTNT
TNDTSATDTPTDDKDASDMNNTGDMNNTDTGNTDTGNTDTGNTDDASNMNNGNDDMGNANDDMSNGNDMGDDMNNANDMN
DDMGNSNNDMGDMGDMNDDMGGDMGDMGDMGDMGN

Sequences:

>Translated_595_residues
MKAIKVLFMMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYKSSTTEWGATALNYINAANGDAKKFSALVEKMRFG
SGILGNLRAHAHLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKQQQENEKAQ
SPYYRSNNYYNSYYSPYYGMYGMGMYGMGMYGMYGMGMYDFYDFYDGMYGFYPNMFFMMQVQDYLMLENYMYAIDQEEIL
DHDASINQLDTPTDDDRDDKDDKPLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAI
TSQAKELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSS
DVVGNYLDGSLKIDGDDRDDLNDAMDNPMQQPVQQTPTNNMGNTHANDSKDQGGNALINPNSTTNTDDTHTDDTHTDTNT
TNDTSATDTPTDDKDASDMNNTGDMNNTDTGNTDTGNTDTGNTDDASNMNNGNDDMGNANDDMSNGNDMGDDMNNANDMN
DDMGNSNNDMGDMGDMNDDMGGDMGDMGDMGDMGN
>Mature_595_residues
MKAIKVLFMMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYKSSTTEWGATALNYINAANGDAKKFSALVEKMRFG
SGILGNLRAHAHLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKQQQENEKAQ
SPYYRSNNYYNSYYSPYYGMYGMGMYGMGMYGMYGMGMYDFYDFYDGMYGFYPNMFFMMQVQDYLMLENYMYAIDQEEIL
DHDASINQLDTPTDDDRDDKDDKPLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAI
TSQAKELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSS
DVVGNYLDGSLKIDGDDRDDLNDAMDNPMQQPVQQTPTNNMGNTHANDSKDQGGNALINPNSTTNTDDTHTDDTHTDTNT
TNDTSATDTPTDDKDASDMNNTGDMNNTDTGNTDTGNTDTGNTDDASNMNNGNDDMGNANDDMSNGNDMGDDMNNANDMN
DDMGNSNNDMGDMGDMNDDMGGDMGDMGDMGDMGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66132; Mature: 66132

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
7.4 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
7.4 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA