Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188526862

Identifier: 188526862

GI number: 188526862

Start: 48613

End: 49611

Strand: Reverse

Name: 188526862

Synonym: HPSH_00260

Alternate gene names: NA

Gene position: 49611-48613 (Counterclockwise)

Preceding gene: 188526863

Following gene: 188526861

Centisome position: 3.08

GC content: 34.33

Gene sequence:

>999_bases
TTGTTGCTTGTTTCTTGCTTTTTAAACGCTATTGACCCTTTTAATTTAGGGGTGTTGTTGAGCCGTTTCCAAATTAAAAA
TGGTTGTATTTATGGGGTGTGTTCTTATAAGGCTTCAAAATTTATCCATGGCTATGAAGAAAGCAAAGTGCAAGTTTTAA
CCGCTCTCAATACTTTAAGCGCGCATCCAATTTGGCGATTCAATCAAGAGAGCGTTACAAAAATCAAAGGAACTTTTGTT
TTTATTTTAGAAAACGACTTGCAATTAGATGAAAACTCTTTTTACAAGAAACTTTTAAACTCACTCATAGACAACGATTT
TTTAAACCGCTCCTATTCAATGACCCCCAATCAAAGACTCTTTTTGAGCGGCTTTTTTGAAAGCAGGGGTAGCATTGATA
CGCAACGAAATTTTTTGACTTTAGATTACTTCTTTCATAGCCCTTTAGAGTTTAAAAAATTCCATTATTTAATTGATTTT
TTCAATATCCCTAGCGAAGTGCTGAATTTCAATTTCAGGGAATTACAGCCTGAATACGCGCAAGGCATCAACCAACGAAA
CGCTCAATTTAGGATTTATTTAAATTGGTATTTATACCATATCGGTCTGTTTAACCCCTATAAAGCGCAAATCGCTCATC
ATATTTTTAAAACCACTCTTATTGATGATGGCATTTATTATAAATTAAGGGATCGACCAACAACAGAATATCGTGGTAAT
AGCTTTATAGAACGCGCTCATTTTTATTTGAAAAATGTCCATCAACAAGATTTAGATAAGAAAAGCATTGAAAAATTAAG
GGAGCAGTTAGGATGGATTCAAGAGAGTGAGGAATTAGACGAGATAGCAAAATCATCAATTTTTATCGCATTCCAACGCC
TAATGTTTGCAGCGCATGTTGCGGTGATTATGACATTAAAGAAAGGAGTTTTATTTCTTTGCCTTTGTATAAAATCACTC
AAAATCCCGATTCCTACTACACTGAAATCCACCATGTGA

Upstream 100 bases:

>100_bases
GAATGTGTTGCTACCAATAAAATTTTAGATAGCATTCTAAAACCTTTAAACAAAAACTAATGAGCACTATCTTATAATCC
TTTTAAAAAATGAAAGGTTA

Downstream 100 bases:

>100_bases
TTTCTTTAGGCAAAGACAAAGAATTAGATGTTTTGGCAAATCTTGCTAAAACTTTGCCCCGCTTGTCATAGGGCTTTAAA
AAAAGGGGCTAGCGAAGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MLLVSCFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIHGYEESKVQVLTALNTLSAHPIWRFNQESVTKIKGTFV
FILENDLQLDENSFYKKLLNSLIDNDFLNRSYSMTPNQRLFLSGFFESRGSIDTQRNFLTLDYFFHSPLEFKKFHYLIDF
FNIPSEVLNFNFRELQPEYAQGINQRNAQFRIYLNWYLYHIGLFNPYKAQIAHHIFKTTLIDDGIYYKLRDRPTTEYRGN
SFIERAHFYLKNVHQQDLDKKSIEKLREQLGWIQESEELDEIAKSSIFIAFQRLMFAAHVAVIMTLKKGVLFLCLCIKSL
KIPIPTTLKSTM

Sequences:

>Translated_332_residues
MLLVSCFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIHGYEESKVQVLTALNTLSAHPIWRFNQESVTKIKGTFV
FILENDLQLDENSFYKKLLNSLIDNDFLNRSYSMTPNQRLFLSGFFESRGSIDTQRNFLTLDYFFHSPLEFKKFHYLIDF
FNIPSEVLNFNFRELQPEYAQGINQRNAQFRIYLNWYLYHIGLFNPYKAQIAHHIFKTTLIDDGIYYKLRDRPTTEYRGN
SFIERAHFYLKNVHQQDLDKKSIEKLREQLGWIQESEELDEIAKSSIFIAFQRLMFAAHVAVIMTLKKGVLFLCLCIKSL
KIPIPTTLKSTM
>Mature_332_residues
MLLVSCFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIHGYEESKVQVLTALNTLSAHPIWRFNQESVTKIKGTFV
FILENDLQLDENSFYKKLLNSLIDNDFLNRSYSMTPNQRLFLSGFFESRGSIDTQRNFLTLDYFFHSPLEFKKFHYLIDF
FNIPSEVLNFNFRELQPEYAQGINQRNAQFRIYLNWYLYHIGLFNPYKAQIAHHIFKTTLIDDGIYYKLRDRPTTEYRGN
SFIERAHFYLKNVHQQDLDKKSIEKLREQLGWIQESEELDEIAKSSIFIAFQRLMFAAHVAVIMTLKKGVLFLCLCIKSL
KIPIPTTLKSTM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39044; Mature: 39044

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLVSCFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIHGYEESKVQVLTALNTLS
CEEHEEHHHCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHC
AHPIWRFNQESVTKIKGTFVFILENDLQLDENSFYKKLLNSLIDNDFLNRSYSMTPNQRL
CCCCEEECHHHHHEECCEEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCEE
FLSGFFESRGSIDTQRNFLTLDYFFHSPLEFKKFHYLIDFFNIPSEVLNFNFRELQPEYA
EEEEEHHCCCCCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHH
QGINQRNAQFRIYLNWYLYHIGLFNPYKAQIAHHIFKTTLIDDGIYYKLRDRPTTEYRGN
CCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
SFIERAHFYLKNVHQQDLDKKSIEKLREQLGWIQESEELDEIAKSSIFIAFQRLMFAAHV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AVIMTLKKGVLFLCLCIKSLKIPIPTTLKSTM
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure
MLLVSCFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIHGYEESKVQVLTALNTLS
CEEHEEHHHCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHC
AHPIWRFNQESVTKIKGTFVFILENDLQLDENSFYKKLLNSLIDNDFLNRSYSMTPNQRL
CCCCEEECHHHHHEECCEEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCEE
FLSGFFESRGSIDTQRNFLTLDYFFHSPLEFKKFHYLIDFFNIPSEVLNFNFRELQPEYA
EEEEEHHCCCCCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHH
QGINQRNAQFRIYLNWYLYHIGLFNPYKAQIAHHIFKTTLIDDGIYYKLRDRPTTEYRGN
CCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
SFIERAHFYLKNVHQQDLDKKSIEKLREQLGWIQESEELDEIAKSSIFIAFQRLMFAAHV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AVIMTLKKGVLFLCLCIKSLKIPIPTTLKSTM
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA