Click here to switch to the map view.

The map label for this gene is cggR [H]

Identifier: 187935546

GI number: 187935546

Start: 3171506

End: 3172537

Strand: Reverse

Name: cggR [H]

Synonym: CLL_A3067

Alternate gene names: 187935546

Gene position: 3172537-3171506 (Counterclockwise)

Preceding gene: 187934511

Following gene: 187934526

Centisome position: 83.48

GC content: 30.43

Gene sequence:

>1032_bases
ATGTTGCATGAGATATTAGAATTACAGAAAAAAATAGTTCCTGAACTTGTTGAAACATTGGAAAAGAGATACAATGTACT
TAGAACTATATATTATAATCAACCAATAGGTAGAAGAGTTCTTGCCAATGAATTGAAAATTGGTGAAAGAGTGGTAAGAA
ATGAAGTAAGTTTTTTGAACTCTCAAGGTTTAATAGAAATAAATACTCCAGGAATGACTGTCACTGAAGATGGTGAGAGG
ATAATAAATAAATTAAAGGATTTTATTCATGAAATAAAGGGACTTTCAGAGCTTGAAGAAGAAGTAAGAAGTAGTCTTAA
TCTAAAGAAAGTTATTATAGTTCCAGGTGATTTAGATAATAATCCTTCGATTTTAAAAGATTTAGGAAAAGCTTGTGCTC
ATTATGTGAAAGATGTATTAGTTAACAATGATATTATTGCGTTAACTGGTGGAAGCACATTAAAAGCTGTAGTGGAACAA
TTTCCTAAGATAAATAATTTATCTAATATTCAAGTAGTACCTGCAAGAGGTGGCGTAGGCAAAAATGTAGAAACTCAGGC
TAATACATTAGCAGCTTCATTAGCAAAAAAGCTAAATGGTAGTTATAAAATGTTGCATGTTTCAGAAAATTTAAGTTTAG
ACGTATTAGATACATTACTTAAAGAAGAAGAAATAAAAGCTGTAGTAGATACGTTACATAAGGCTGATATATTAATGTAT
GGCATAGGAAATGCTGTACAAATGGCTAAAAAAAGAGGCGTTTCGGAAGCAAAAATTAAGAAGCTTATAGATAATGGTGC
AGTTGGGGAAGCCTTTGGATGTTATTTTACCAAAAGTTCTCAAATTATATCAGAAGCTACTTCAATTGGAATAAAAATTA
GCGAAGCGAGAAAAATCAGAACACATATTGCTATAGCAGGTGGAAAGAATAAAGTAGAGTCAATAATATCGACAGAATTT
AATGATATTAATGGTATCTTAGTCACAGACGAAGAAACTGGTAAAAAAATACTAGAAACATTAAATCGTTAA

Upstream 100 bases:

>100_bases
TTTTGCTTAAAGCCTTTAAAAATTTCATAAGGTGCTTTATAATGTTATTTGTGGGACATGATTTAAGTGCATGGGACGCA
TAAAGACCAAGGGAGTGTTT

Downstream 100 bases:

>100_bases
TTTATGTATAAAATTAATTTAGTTTGTAAAATTTAATTTTTATAAAAAGCATTATTTTAGGAGGTAATTTTAATGGCAAA
TGTAAAAGTAGCAATTAATG

Product: sugar-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MLHEILELQKKIVPELVETLEKRYNVLRTIYYNQPIGRRVLANELKIGERVVRNEVSFLNSQGLIEINTPGMTVTEDGER
IINKLKDFIHEIKGLSELEEEVRSSLNLKKVIIVPGDLDNNPSILKDLGKACAHYVKDVLVNNDIIALTGGSTLKAVVEQ
FPKINNLSNIQVVPARGGVGKNVETQANTLAASLAKKLNGSYKMLHVSENLSLDVLDTLLKEEEIKAVVDTLHKADILMY
GIGNAVQMAKKRGVSEAKIKKLIDNGAVGEAFGCYFTKSSQIISEATSIGIKISEARKIRTHIAIAGGKNKVESIISTEF
NDINGILVTDEETGKKILETLNR

Sequences:

>Translated_343_residues
MLHEILELQKKIVPELVETLEKRYNVLRTIYYNQPIGRRVLANELKIGERVVRNEVSFLNSQGLIEINTPGMTVTEDGER
IINKLKDFIHEIKGLSELEEEVRSSLNLKKVIIVPGDLDNNPSILKDLGKACAHYVKDVLVNNDIIALTGGSTLKAVVEQ
FPKINNLSNIQVVPARGGVGKNVETQANTLAASLAKKLNGSYKMLHVSENLSLDVLDTLLKEEEIKAVVDTLHKADILMY
GIGNAVQMAKKRGVSEAKIKKLIDNGAVGEAFGCYFTKSSQIISEATSIGIKISEARKIRTHIAIAGGKNKVESIISTEF
NDINGILVTDEETGKKILETLNR
>Mature_343_residues
MLHEILELQKKIVPELVETLEKRYNVLRTIYYNQPIGRRVLANELKIGERVVRNEVSFLNSQGLIEINTPGMTVTEDGER
IINKLKDFIHEIKGLSELEEEVRSSLNLKKVIIVPGDLDNNPSILKDLGKACAHYVKDVLVNNDIIALTGGSTLKAVVEQ
FPKINNLSNIQVVPARGGVGKNVETQANTLAASLAKKLNGSYKMLHVSENLSLDVLDTLLKEEEIKAVVDTLHKADILMY
GIGNAVQMAKKRGVSEAKIKKLIDNGAVGEAFGCYFTKSSQIISEATSIGIKISEARKIRTHIAIAGGKNKVESIISTEF
NDINGILVTDEETGKKILETLNR

Specific function: Represses the transcription of the gapA gene [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=266, Percent_Identity=24.0601503759398, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082414, Length=251, Percent_Identity=23.9043824701195, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 37776; Mature: 37776

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHEILELQKKIVPELVETLEKRYNVLRTIYYNQPIGRRVLANELKIGERVVRNEVSFLN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SQGLIEINTPGMTVTEDGERIINKLKDFIHEIKGLSELEEEVRSSLNLKKVIIVPGDLDN
CCCEEEECCCCCEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEEEECCCCCC
NPSILKDLGKACAHYVKDVLVNNDIIALTGGSTLKAVVEQFPKINNLSNIQVVPARGGVG
CHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEEECCCCCC
KNVETQANTLAASLAKKLNGSYKMLHVSENLSLDVLDTLLKEEEIKAVVDTLHKADILMY
CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEE
GIGNAVQMAKKRGVSEAKIKKLIDNGAVGEAFGCYFTKSSQIISEATSIGIKISEARKIR
CCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHEEECCCHHHHHHHHHCCEEEHHHHHHH
THIAIAGGKNKVESIISTEFNDINGILVTDEETGKKILETLNR
HHEEEECCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCC
>Mature Secondary Structure
MLHEILELQKKIVPELVETLEKRYNVLRTIYYNQPIGRRVLANELKIGERVVRNEVSFLN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SQGLIEINTPGMTVTEDGERIINKLKDFIHEIKGLSELEEEVRSSLNLKKVIIVPGDLDN
CCCEEEECCCCCEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEEEECCCCCC
NPSILKDLGKACAHYVKDVLVNNDIIALTGGSTLKAVVEQFPKINNLSNIQVVPARGGVG
CHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEEECCCCCC
KNVETQANTLAASLAKKLNGSYKMLHVSENLSLDVLDTLLKEEEIKAVVDTLHKADILMY
CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEE
GIGNAVQMAKKRGVSEAKIKKLIDNGAVGEAFGCYFTKSSQIISEATSIGIKISEARKIR
CCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHEEECCCHHHHHHHHHCCEEEHHHHHHH
THIAIAGGKNKVESIISTEFNDINGILVTDEETGKKILETLNR
HHEEEECCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]