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The map label for this gene is ydeB [H]

Identifier: 187935467

GI number: 187935467

Start: 1078242

End: 1078724

Strand: Reverse

Name: ydeB [H]

Synonym: CLL_A1053

Alternate gene names: 187935467

Gene position: 1078724-1078242 (Counterclockwise)

Preceding gene: 187935736

Following gene: 187933875

Centisome position: 28.39

GC content: 25.67

Gene sequence:

>483_bases
TTGTTTAAGGTTGGTGATAAAGTTGTTTATCCCATGCAAGGAATAGGAATAGTTCAACGAATTGAAGAAAAACTTTTTTG
TGGCACGAAAAGAAAATATTGCATAATACAAATGTTAAAAAATAGTTTGGAAATAATGATACCCATTGATAGAATAGCTA
AGTCTAGGTTACGTATGATTAATGATATTAATACTTTAGAAGATATACTAAATCATATTCAAGACACATCTGACCCGGAA
GAATTAAATCTTCCTTCTAAAGAAAGATATGAAATAAATTTAAATAAAATAAAATCTGGTTTATTGGAAGATAGTCTAGA
TGTATTTTATAATTTAACTCTTATCAATAAGATGAAAGCTCTCAACTCAACAGAAAAGCAAATATTAAATACAGCACAAA
ATTTTTTAATAGATGAAATAAGAGTCATTAAAGACATAAGTGAAAATGAAGCCACAAAAATATTAAAATCTAGTATTAGT
TAA

Upstream 100 bases:

>100_bases
TTAGCTTTGTCTTTACTTTTTATAATATATTTTACATAAATGGATTAAATACTATAAATAGTGTTATAATGTAAATATAT
AGATAATAGGAGGTGTTTTT

Downstream 100 bases:

>100_bases
ATTAATACTTTAAATTTATGAGAATAACTGATAGCTTTATTAAAATCAAGTTATTACTCATAATTTTTTCTTTAAATTAC
ATAAAATAAATATTCTATGT

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MFKVGDKVVYPMQGIGIVQRIEEKLFCGTKRKYCIIQMLKNSLEIMIPIDRIAKSRLRMINDINTLEDILNHIQDTSDPE
ELNLPSKERYEINLNKIKSGLLEDSLDVFYNLTLINKMKALNSTEKQILNTAQNFLIDEIRVIKDISENEATKILKSSIS

Sequences:

>Translated_160_residues
MFKVGDKVVYPMQGIGIVQRIEEKLFCGTKRKYCIIQMLKNSLEIMIPIDRIAKSRLRMINDINTLEDILNHIQDTSDPE
ELNLPSKERYEINLNKIKSGLLEDSLDVFYNLTLINKMKALNSTEKQILNTAQNFLIDEIRVIKDISENEATKILKSSIS
>Mature_160_residues
MFKVGDKVVYPMQGIGIVQRIEEKLFCGTKRKYCIIQMLKNSLEIMIPIDRIAKSRLRMINDINTLEDILNHIQDTSDPE
ELNLPSKERYEINLNKIKSGLLEDSLDVFYNLTLINKMKALNSTEKQILNTAQNFLIDEIRVIKDISENEATKILKSSIS

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 18474; Mature: 18474

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKVGDKVVYPMQGIGIVQRIEEKLFCGTKRKYCIIQMLKNSLEIMIPIDRIAKSRLRMI
CCCCCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHEEECHHHHHHHHHHHH
NDINTLEDILNHIQDTSDPEELNLPSKERYEINLNKIKSGLLEDSLDVFYNLTLINKMKA
HHHHHHHHHHHHHCCCCCCHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNSTEKQILNTAQNFLIDEIRVIKDISENEATKILKSSIS
HCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MFKVGDKVVYPMQGIGIVQRIEEKLFCGTKRKYCIIQMLKNSLEIMIPIDRIAKSRLRMI
CCCCCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHEEECHHHHHHHHHHHH
NDINTLEDILNHIQDTSDPEELNLPSKERYEINLNKIKSGLLEDSLDVFYNLTLINKMKA
HHHHHHHHHHHHHCCCCCCHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNSTEKQILNTAQNFLIDEIRVIKDISENEATKILKSSIS
HCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]