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The map label for this gene is ydiF [H]

Identifier: 187935400

GI number: 187935400

Start: 2104505

End: 2106160

Strand: Reverse

Name: ydiF [H]

Synonym: CLL_A2014

Alternate gene names: 187935400

Gene position: 2106160-2104505 (Counterclockwise)

Preceding gene: 187935022

Following gene: 187933500

Centisome position: 55.42

GC content: 24.64

Gene sequence:

>1656_bases
TTGGTATTAATAAAATTGGATAAAGTAAAAAAGTATTATGGAGATAGGTTGATTTTAGATATATGTAATTTAGAAATATT
AGAAAGTGATAAAATAGGAATTGTAGGAGAAAATGGAGCGGGAAAAACAACTCTTATAAAAGTTATTTTAGGTGAAGTAG
CACCTGATGAGGGAAAAGTTTTTCTAAGTAATAGTTATTCATATATAAGTCAAAGTGAAGAATGTAGTGGAGAGTATCAA
GGAGGAAAAATTAAAAAAATAATAAAATCTCCAGATAATTATGATGGATTTTTGTCAGGTGGAGAAAAGATGAAAATTAA
GATAAATAAGTCCCTTAATGTACAGAGTAGTATTCTAATTGCAGATGAGCCAACAGCTAATCTTGATACTAATAGTATTA
AAAATATTGAAAAAATTATTAGTGAGTATAAGGGGAGTGTATTATTAGTTTCTCATGATAGAGAGTTTTTAGATAAACTT
TGTAATAATATATTAGAAATAGAAAATGGAAAAGTTAAGTTATATAAAGGGAATTATTCTAAATATATTAAGTTAAAGGC
TGAGGAACGTGAAGCAGAACAAAGAGAATATCATAGATATATAGCAGAAAAAAAGAGACTTGAAAAAGCTATAATAGGAA
AAGAAAATAATAGGGATTCTATTAGAAAAACACCAAAGAGAATGGGGAATTCAGAAGCACGATTGCATAAAATGGGAAAT
CAAAGGTCAAAGAAAAGTTTAGATGGAAATATAAAATCTTTAAAAAGTAGAATTAATCATTTAGAAGAAAAAGAAAAACC
TAATGCTATTAAAGAAATAAGGATAAAAATAAATAAAGGAAAGGAAATGCACTCAAAAACAGTTATAGAAGTTAGAAATT
TAAATTTATATGTAAATAATGAAATCCTTATAAATGATTGTAATTTTAAGATTAAAAATGGTGAAAAAGTAGCGATTACT
GGCGCGAATGGTTGTGGTAAGACAACTTTAATAAAGAAGATAATAAAAAATAATACGGAAAATATTAGATTGTCACAAGA
TATATCCATAGGATATTTTGATCAAAGTCAAGATATTTTACATGCAAATAAATCAATATTAGATAATATAAAATTAAATA
GTTCTTATGATGAAACTTTTATAAGGATTAATTTAGATGGATTTGGATTTAAAGGGGATAGTGTATATAAAAATATTTCT
ACATTAAGTGGAGGAGAAAAGGTTAAGTGTGCACTTTGTAAAAATATTTTAAGTGATAATAATACTTTAATTTTAGATGA
GCCTACTAATTATTTAGATATAAAATCTATTGAAGCATTAGAAATTGCTATTAAAAATACAGAAAAAACAGTTTTGATAG
TTTCTCATGATAGGAAATTTATTTCTAATGTATGTGATTGTATTATAGAGATACGAGACAATAAGTTAAACTATTTCAAT
GGAAATTATAATGAGTTTGTTTATGAGAAAATAAACAACAAAAACAAAAAAGAAGAGAAAAGTAGTGAGCGAGAAAAACG
AGAATTGCTACTTGTATTACAAAATAAACTTTCAGAAATTATATCAAGATTGTCTTTAGAAAAGGATTTATCAATTAAGG
ATAAACTAAATTTGGAATATATAGAATTACTAAATAAGATTAAAACATTAAAATAA

Upstream 100 bases:

>100_bases
TTGTACTTAAAATTTTGGAGAGTAAATGATTCTATAGGGACAGTATGCCTTTTTACGGGATTATTATATACTCTCTTCTA
AGATTTAGGAGGGATTTTTT

Downstream 100 bases:

>100_bases
TTTATTAATAGAATAATAAGCTGTTAATATATATTATACAAAGGGCTATTGCATTTTAAAATGTAATAGCCCTTTATATA
TATAGAATCATTATGAATTT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 551

Protein sequence:

>551_residues
MVLIKLDKVKKYYGDRLILDICNLEILESDKIGIVGENGAGKTTLIKVILGEVAPDEGKVFLSNSYSYISQSEECSGEYQ
GGKIKKIIKSPDNYDGFLSGGEKMKIKINKSLNVQSSILIADEPTANLDTNSIKNIEKIISEYKGSVLLVSHDREFLDKL
CNNILEIENGKVKLYKGNYSKYIKLKAEEREAEQREYHRYIAEKKRLEKAIIGKENNRDSIRKTPKRMGNSEARLHKMGN
QRSKKSLDGNIKSLKSRINHLEEKEKPNAIKEIRIKINKGKEMHSKTVIEVRNLNLYVNNEILINDCNFKIKNGEKVAIT
GANGCGKTTLIKKIIKNNTENIRLSQDISIGYFDQSQDILHANKSILDNIKLNSSYDETFIRINLDGFGFKGDSVYKNIS
TLSGGEKVKCALCKNILSDNNTLILDEPTNYLDIKSIEALEIAIKNTEKTVLIVSHDRKFISNVCDCIIEIRDNKLNYFN
GNYNEFVYEKINNKNKKEEKSSEREKRELLLVLQNKLSEIISRLSLEKDLSIKDKLNLEYIELLNKIKTLK

Sequences:

>Translated_551_residues
MVLIKLDKVKKYYGDRLILDICNLEILESDKIGIVGENGAGKTTLIKVILGEVAPDEGKVFLSNSYSYISQSEECSGEYQ
GGKIKKIIKSPDNYDGFLSGGEKMKIKINKSLNVQSSILIADEPTANLDTNSIKNIEKIISEYKGSVLLVSHDREFLDKL
CNNILEIENGKVKLYKGNYSKYIKLKAEEREAEQREYHRYIAEKKRLEKAIIGKENNRDSIRKTPKRMGNSEARLHKMGN
QRSKKSLDGNIKSLKSRINHLEEKEKPNAIKEIRIKINKGKEMHSKTVIEVRNLNLYVNNEILINDCNFKIKNGEKVAIT
GANGCGKTTLIKKIIKNNTENIRLSQDISIGYFDQSQDILHANKSILDNIKLNSSYDETFIRINLDGFGFKGDSVYKNIS
TLSGGEKVKCALCKNILSDNNTLILDEPTNYLDIKSIEALEIAIKNTEKTVLIVSHDRKFISNVCDCIIEIRDNKLNYFN
GNYNEFVYEKINNKNKKEEKSSEREKRELLLVLQNKLSEIISRLSLEKDLSIKDKLNLEYIELLNKIKTLK
>Mature_551_residues
MVLIKLDKVKKYYGDRLILDICNLEILESDKIGIVGENGAGKTTLIKVILGEVAPDEGKVFLSNSYSYISQSEECSGEYQ
GGKIKKIIKSPDNYDGFLSGGEKMKIKINKSLNVQSSILIADEPTANLDTNSIKNIEKIISEYKGSVLLVSHDREFLDKL
CNNILEIENGKVKLYKGNYSKYIKLKAEEREAEQREYHRYIAEKKRLEKAIIGKENNRDSIRKTPKRMGNSEARLHKMGN
QRSKKSLDGNIKSLKSRINHLEEKEKPNAIKEIRIKINKGKEMHSKTVIEVRNLNLYVNNEILINDCNFKIKNGEKVAIT
GANGCGKTTLIKKIIKNNTENIRLSQDISIGYFDQSQDILHANKSILDNIKLNSSYDETFIRINLDGFGFKGDSVYKNIS
TLSGGEKVKCALCKNILSDNNTLILDEPTNYLDIKSIEALEIAIKNTEKTVLIVSHDRKFISNVCDCIIEIRDNKLNYFN
GNYNEFVYEKINNKNKKEEKSSEREKRELLLVLQNKLSEIISRLSLEKDLSIKDKLNLEYIELLNKIKTLK

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=546, Percent_Identity=23.6263736263736, Blast_Score=169, Evalue=8e-42,
Organism=Homo sapiens, GI10947137, Length=407, Percent_Identity=27.2727272727273, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI27881506, Length=407, Percent_Identity=28.009828009828, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI69354671, Length=403, Percent_Identity=24.5657568238213, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI10947135, Length=403, Percent_Identity=24.5657568238213, Blast_Score=127, Evalue=2e-29,
Organism=Escherichia coli, GI1789751, Length=555, Percent_Identity=25.9459459459459, Blast_Score=195, Evalue=6e-51,
Organism=Escherichia coli, GI2367384, Length=544, Percent_Identity=27.3897058823529, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI1787041, Length=552, Percent_Identity=26.9927536231884, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1787182, Length=556, Percent_Identity=24.8201438848921, Blast_Score=182, Evalue=6e-47,
Organism=Escherichia coli, GI1786398, Length=203, Percent_Identity=26.1083743842365, Blast_Score=69, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17559834, Length=400, Percent_Identity=27.5, Blast_Score=170, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17553372, Length=409, Percent_Identity=28.6063569682152, Blast_Score=153, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17555318, Length=420, Percent_Identity=25.2380952380952, Blast_Score=141, Evalue=1e-33,
Organism=Saccharomyces cerevisiae, GI6321121, Length=410, Percent_Identity=28.780487804878, Blast_Score=170, Evalue=6e-43,
Organism=Saccharomyces cerevisiae, GI6320874, Length=540, Percent_Identity=24.4444444444444, Blast_Score=159, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6323278, Length=210, Percent_Identity=31.9047619047619, Blast_Score=120, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6324314, Length=212, Percent_Identity=32.0754716981132, Blast_Score=117, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6325030, Length=213, Percent_Identity=30.0469483568075, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24666836, Length=408, Percent_Identity=28.6764705882353, Blast_Score=170, Evalue=3e-42,
Organism=Drosophila melanogaster, GI24641342, Length=501, Percent_Identity=26.9461077844311, Blast_Score=163, Evalue=3e-40,
Organism=Drosophila melanogaster, GI24642252, Length=554, Percent_Identity=23.6462093862816, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI18859989, Length=554, Percent_Identity=23.6462093862816, Blast_Score=140, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 62876; Mature: 62876

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLIKLDKVKKYYGDRLILDICNLEILESDKIGIVGENGAGKTTLIKVILGEVAPDEGKV
CEEEEEHHHHHHHCCEEEEEECCEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCCE
FLSNSYSYISQSEECSGEYQGGKIKKIIKSPDNYDGFLSGGEKMKIKINKSLNVQSSILI
EEECCCHHHCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEE
ADEPTANLDTNSIKNIEKIISEYKGSVLLVSHDREFLDKLCNNILEIENGKVKLYKGNYS
ECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHEECCCEEEEEECCCE
KYIKLKAEEREAEQREYHRYIAEKKRLEKAIIGKENNRDSIRKTPKRMGNSEARLHKMGN
EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCC
QRSKKSLDGNIKSLKSRINHLEEKEKPNAIKEIRIKINKGKEMHSKTVIEVRNLNLYVNN
CHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEEEECC
EILINDCNFKIKNGEKVAITGANGCGKTTLIKKIIKNNTENIRLSQDISIGYFDQSQDIL
EEEEEECCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCEEEEECCCCHHH
HANKSILDNIKLNSSYDETFIRINLDGFGFKGDSVYKNISTLSGGEKVKCALCKNILSDN
HHCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHCCC
NTLILDEPTNYLDIKSIEALEIAIKNTEKTVLIVSHDRKFISNVCDCIIEIRDNKLNYFN
CEEEEECCCCEEECCCCEEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHEECCEEEEEC
GNYNEFVYEKINNKNKKEEKSSEREKRELLLVLQNKLSEIISRLSLEKDLSIKDKLNLEY
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHH
IELLNKIKTLK
HHHHHHHHCCC
>Mature Secondary Structure
MVLIKLDKVKKYYGDRLILDICNLEILESDKIGIVGENGAGKTTLIKVILGEVAPDEGKV
CEEEEEHHHHHHHCCEEEEEECCEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCCE
FLSNSYSYISQSEECSGEYQGGKIKKIIKSPDNYDGFLSGGEKMKIKINKSLNVQSSILI
EEECCCHHHCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEE
ADEPTANLDTNSIKNIEKIISEYKGSVLLVSHDREFLDKLCNNILEIENGKVKLYKGNYS
ECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHEECCCEEEEEECCCE
KYIKLKAEEREAEQREYHRYIAEKKRLEKAIIGKENNRDSIRKTPKRMGNSEARLHKMGN
EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCC
QRSKKSLDGNIKSLKSRINHLEEKEKPNAIKEIRIKINKGKEMHSKTVIEVRNLNLYVNN
CHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEEEECC
EILINDCNFKIKNGEKVAITGANGCGKTTLIKKIIKNNTENIRLSQDISIGYFDQSQDIL
EEEEEECCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCEEEEECCCCHHH
HANKSILDNIKLNSSYDETFIRINLDGFGFKGDSVYKNISTLSGGEKVKCALCKNILSDN
HHCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHCCC
NTLILDEPTNYLDIKSIEALEIAIKNTEKTVLIVSHDRKFISNVCDCIIEIRDNKLNYFN
CEEEEECCCCEEECCCCEEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHEECCEEEEEC
GNYNEFVYEKINNKNKKEEKSSEREKRELLLVLQNKLSEIISRLSLEKDLSIKDKLNLEY
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHH
IELLNKIKTLK
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]