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The map label for this gene is rnpA [H]

Identifier: 187934705

GI number: 187934705

Start: 3799393

End: 3799770

Strand: Reverse

Name: rnpA [H]

Synonym: CLL_A3603

Alternate gene names: 187934705

Gene position: 3799770-3799393 (Counterclockwise)

Preceding gene: 187934723

Following gene: 187934380

Centisome position: 99.99

GC content: 24.07

Gene sequence:

>378_bases
ATGATTTATAGATTAAAAAAAAATATAGAATTTATAATTGTATATAGAAGAGGGAAATCATTTGCTAATAAGACTTTGGT
TCTATATGTATTGAAAAATAAAAGAAACAAAGACAAAGATGGTATCGCATATAGTAAAGTAGGAATTTCTGTAAGTAAAA
AAGTTGGAAACAGTGTTGTTAGAAGTAAATGTAAGAGATTATTAAGCGAGAGCTTTAGATTAAATTATAATAATATATTA
AAAGGATATGATTGTGTATTTGTAGCAAGAAATCCTATAAGAGATAGTAATTATTTTGAAACTGAAAAGGCGATGAAGAA
TTTAATTAAAAAGGCAGGCTTATATTATGATGAAGAAAATGGTATTAAGTCTAATTAA

Upstream 100 bases:

>100_bases
AAAGAAGACAAAAAGGAAGAAAAAAATTAACAGCATAAGGGCCGCATTAAGTGGCCTTTTTTCTGCAAATGCAGGAAAAA
AGGAGTAATGGAAATACCGT

Downstream 100 bases:

>100_bases
ATTTTATAGAAAATCTATTTCACCGGGGAGAAGTCCTTGTTGTAGATTTACGCCAACTTGCTCACAGTATGCATTGGATG
CAGTAAATAAGTATGGAGTG

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MIYRLKKNIEFIIVYRRGKSFANKTLVLYVLKNKRNKDKDGIAYSKVGISVSKKVGNSVVRSKCKRLLSESFRLNYNNIL
KGYDCVFVARNPIRDSNYFETEKAMKNLIKKAGLYYDEENGIKSN

Sequences:

>Translated_125_residues
MIYRLKKNIEFIIVYRRGKSFANKTLVLYVLKNKRNKDKDGIAYSKVGISVSKKVGNSVVRSKCKRLLSESFRLNYNNIL
KGYDCVFVARNPIRDSNYFETEKAMKNLIKKAGLYYDEENGIKSN
>Mature_125_residues
MIYRLKKNIEFIIVYRRGKSFANKTLVLYVLKNKRNKDKDGIAYSKVGISVSKKVGNSVVRSKCKRLLSESFRLNYNNIL
KGYDCVFVARNPIRDSNYFETEKAMKNLIKKAGLYYDEENGIKSN

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 14545; Mature: 14545

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYRLKKNIEFIIVYRRGKSFANKTLVLYVLKNKRNKDKDGIAYSKVGISVSKKVGNSVV
CEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEHHCCCHHHHHCHHHH
RSKCKRLLSESFRLNYNNILKGYDCVFVARNPIRDSNYFETEKAMKNLIKKAGLYYDEEN
HHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCEECCCC
GIKSN
CCCCC
>Mature Secondary Structure
MIYRLKKNIEFIIVYRRGKSFANKTLVLYVLKNKRNKDKDGIAYSKVGISVSKKVGNSVV
CEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEHHCCCHHHHHCHHHH
RSKCKRLLSESFRLNYNNILKGYDCVFVARNPIRDSNYFETEKAMKNLIKKAGLYYDEEN
HHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCEECCCC
GIKSN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA