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The map label for this gene is lyc [H]

Identifier: 187934395

GI number: 187934395

Start: 3177797

End: 3178759

Strand: Reverse

Name: lyc [H]

Synonym: CLL_A3072

Alternate gene names: 187934395

Gene position: 3178759-3177797 (Counterclockwise)

Preceding gene: 187934998

Following gene: 187933852

Centisome position: 83.64

GC content: 29.8

Gene sequence:

>963_bases
ATGCAAGATAAAAATCCTAAAAGTCTTTTTGGAATAGATATTAATGAATATACTCAAAACGTTCAATTTCCTATAATAGC
TACCAAAATAGACTTTCTATACTTAAGATCATCTGGATCAGGTTCAGGAAGATTTAGAGTAGATAAAAAATTTATTCAAT
TTGCAAAAGAGAGCAGGAACTATGGTATTCCTGTAGGAGCATATCATTTTGGAGTTCCATCATATGATTTAACAGATGCT
GATAGACAATGTGATGATTTTATAAATGTTCTTCAAGAAGGATTTGGAGAAAAAAATTATGGTGATTTATTTCCTGTTTT
AGATGTAGAATATCCAATTGATAAAACTATATCAACCAAAACGTTAGTAGAATGGATAGATAGGTTTAGAAAGAGATTTG
AAAAAAAAACTAGAAGAAGACTTATGCTTTATACTGGATTATTTTTTATAGAATTATATGATAATTTCTATGTTGAAGGA
AAAGGATATCCATTAAAAAATATGCCTTTATGGATCGCAATGTACACTAAGCTTCCTATTAATCCACCATATCCACCTAA
CATAGGAGGATGGACAAGATGGAGAGTTTGGCAGTTTAGCGAAGATCAAAAAGTGATGGGAGTGGGAAATCCAGTAGATG
CTAATTGGGGACCAGATCATATAGAATTATTAATTCAACCTAGAGATGTAACTGGGTTCAAAGCAACAATAGATAAAAAT
CATATATATTTATCATGGGATAAAGTTCCTGATATGGATTTGCTAGGATATAATATATTTGTAAATAATTATTGGATAGC
AACTGTGGATGAAAATGCAACAAAATATGTAATAGATACAAATAAGTTGAATGTTCCTAAAGGAAGTCCTATAAATGTTA
CGATTGAAGCATTTGATTATGATGGTGAAACATCCAGATCTAGAGCGAAAGTTAAATTACAGAATAATCAATTAAAAAGT
TAA

Upstream 100 bases:

>100_bases
GATAGAAGATTTATAGTTATTATATAATTATATTTTATTGGTACTTTTTTTGAGTAACTTTAATATTTTATAATAAGACT
ACTTTTTATTTGGAGGAAAT

Downstream 100 bases:

>100_bases
GCTTAAACTATAAAGTGAAGGTGTCTTATAAAATGTGAATAAGATACCTTTATTTTTATGTAAATTATACGATAATATTC
TTATAAAATATAAGAAATAA

Product: glycosyl hydrolase, family 25

Products: NA

Alternate protein names: 1,4-beta-N-acetylmuramidase; Autolysin [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MQDKNPKSLFGIDINEYTQNVQFPIIATKIDFLYLRSSGSGSGRFRVDKKFIQFAKESRNYGIPVGAYHFGVPSYDLTDA
DRQCDDFINVLQEGFGEKNYGDLFPVLDVEYPIDKTISTKTLVEWIDRFRKRFEKKTRRRLMLYTGLFFIELYDNFYVEG
KGYPLKNMPLWIAMYTKLPINPPYPPNIGGWTRWRVWQFSEDQKVMGVGNPVDANWGPDHIELLIQPRDVTGFKATIDKN
HIYLSWDKVPDMDLLGYNIFVNNYWIATVDENATKYVIDTNKLNVPKGSPINVTIEAFDYDGETSRSRAKVKLQNNQLKS

Sequences:

>Translated_320_residues
MQDKNPKSLFGIDINEYTQNVQFPIIATKIDFLYLRSSGSGSGRFRVDKKFIQFAKESRNYGIPVGAYHFGVPSYDLTDA
DRQCDDFINVLQEGFGEKNYGDLFPVLDVEYPIDKTISTKTLVEWIDRFRKRFEKKTRRRLMLYTGLFFIELYDNFYVEG
KGYPLKNMPLWIAMYTKLPINPPYPPNIGGWTRWRVWQFSEDQKVMGVGNPVDANWGPDHIELLIQPRDVTGFKATIDKN
HIYLSWDKVPDMDLLGYNIFVNNYWIATVDENATKYVIDTNKLNVPKGSPINVTIEAFDYDGETSRSRAKVKLQNNQLKS
>Mature_320_residues
MQDKNPKSLFGIDINEYTQNVQFPIIATKIDFLYLRSSGSGSGRFRVDKKFIQFAKESRNYGIPVGAYHFGVPSYDLTDA
DRQCDDFINVLQEGFGEKNYGDLFPVLDVEYPIDKTISTKTLVEWIDRFRKRFEKKTRRRLMLYTGLFFIELYDNFYVEG
KGYPLKNMPLWIAMYTKLPINPPYPPNIGGWTRWRVWQFSEDQKVMGVGNPVDANWGPDHIELLIQPRDVTGFKATIDKN
HIYLSWDKVPDMDLLGYNIFVNNYWIATVDENATKYVIDTNKLNVPKGSPINVTIEAFDYDGETSRSRAKVKLQNNQLKS

Specific function: Unknown

COG id: COG3757

COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 25 family [H]

Homologues:

Organism=Escherichia coli, GI87082043, Length=214, Percent_Identity=27.1028037383178, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002053
- InterPro:   IPR008270
- InterPro:   IPR017853
- InterPro:   IPR018077
- InterPro:   IPR013781
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01183 Glyco_hydro_25; PF08239 SH3_3 [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 37187; Mature: 37187

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS50853 FN3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDKNPKSLFGIDINEYTQNVQFPIIATKIDFLYLRSSGSGSGRFRVDKKFIQFAKESRN
CCCCCCCEEEEEEHHHHHCCCCCEEEEEEEEEEEEECCCCCCCEEEECHHHHHHHHHCCC
YGIPVGAYHFGVPSYDLTDADRQCDDFINVLQEGFGEKNYGDLFPVLDVEYPIDKTISTK
CCCEECEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHH
TLVEWIDRFRKRFEKKTRRRLMLYTGLFFIELYDNFYVEGKGYPLKNMPLWIAMYTKLPI
HHHHHHHHHHHHHHHHHHHEEEEHHHEEEEEEECCEEECCCCCCCCCCCEEEEEEEECCC
NPPYPPNIGGWTRWRVWQFSEDQKVMGVGNPVDANWGPDHIELLIQPRDVTGFKATIDKN
CCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEECC
HIYLSWDKVPDMDLLGYNIFVNNYWIATVDENATKYVIDTNKLNVPKGSPINVTIEAFDY
EEEEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCEECCCCCCCEEEEEEEEEC
DGETSRSRAKVKLQNNQLKS
CCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MQDKNPKSLFGIDINEYTQNVQFPIIATKIDFLYLRSSGSGSGRFRVDKKFIQFAKESRN
CCCCCCCEEEEEEHHHHHCCCCCEEEEEEEEEEEEECCCCCCCEEEECHHHHHHHHHCCC
YGIPVGAYHFGVPSYDLTDADRQCDDFINVLQEGFGEKNYGDLFPVLDVEYPIDKTISTK
CCCEECEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHH
TLVEWIDRFRKRFEKKTRRRLMLYTGLFFIELYDNFYVEGKGYPLKNMPLWIAMYTKLPI
HHHHHHHHHHHHHHHHHHHEEEEHHHEEEEEEECCEEECCCCCCCCCCCEEEEEEEECCC
NPPYPPNIGGWTRWRVWQFSEDQKVMGVGNPVDANWGPDHIELLIQPRDVTGFKATIDKN
CCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEECC
HIYLSWDKVPDMDLLGYNIFVNNYWIATVDENATKYVIDTNKLNVPKGSPINVTIEAFDY
EEEEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCEECCCCCCCEEEEEEEEEC
DGETSRSRAKVKLQNNQLKS
CCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]