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The map label for this gene is smpB

Identifier: 187934027

GI number: 187934027

Start: 3150536

End: 3151006

Strand: Reverse

Name: smpB

Synonym: CLL_A3050

Alternate gene names: 187934027

Gene position: 3151006-3150536 (Counterclockwise)

Preceding gene: 187934548

Following gene: 187935507

Centisome position: 82.91

GC content: 28.87

Gene sequence:

>471_bases
ATGGTAAGAAAAAAAAGTTCAAATACTTTAGCAGAAAATAGAAAAGCAAGACATGAGTATTTTATAGAGGAAACTATTGA
AGCTGGTATTGCATTGGTTGGAACAGAAGTAAAATCTATTAGAAATGGTAGAGCTAATTTAAAAGAGTCTTATGCAGATA
TCAGAAATGGTGAAATTTTTATATTAAGCATGCATATAAGTCCATATGAACAAGGTAATATATTTAATGTTGAGCCTTTA
AGAGAAAAGAAATTATTATTACACAAGTCAGAAATTCACAGATTAGCAGGTTTAGTATCTCGAGATGGATATACTTTAAT
TCCATTAACATTATACTTAAAAGCTGGAAAAGTTAAAGTTGCTTTGGGTATTTGTAAAGGTAAGAAAGATTACGATAAAA
GAGATTCTATGCTAGAAAAAGCTCATAATAGAGAAATGCAAAGAGCCTTGAAAGAAAGAAGTAGATATTAG

Upstream 100 bases:

>100_bases
CAGTAGGCTGTATTTTAAATATGTGTTGTTTATGAGTACAGAAATACTATGTTAAAATACAGCTATACGTTAAAATTTAT
AATTATTTGTGGGTGATTAA

Downstream 100 bases:

>100_bases
TGAGATGTTTATTTTGAATATAGTATAATAAAAAACTAATTTAGTGGAAGTCTATTTAAATTTTCATTAAATTAGTTTTT
TATTTTTAGCGTATGTTTTA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MVRKKSSNTLAENRKARHEYFIEETIEAGIALVGTEVKSIRNGRANLKESYADIRNGEIFILSMHISPYEQGNIFNVEPL
REKKLLLHKSEIHRLAGLVSRDGYTLIPLTLYLKAGKVKVALGICKGKKDYDKRDSMLEKAHNREMQRALKERSRY

Sequences:

>Translated_156_residues
MVRKKSSNTLAENRKARHEYFIEETIEAGIALVGTEVKSIRNGRANLKESYADIRNGEIFILSMHISPYEQGNIFNVEPL
REKKLLLHKSEIHRLAGLVSRDGYTLIPLTLYLKAGKVKVALGICKGKKDYDKRDSMLEKAHNREMQRALKERSRY
>Mature_156_residues
MVRKKSSNTLAENRKARHEYFIEETIEAGIALVGTEVKSIRNGRANLKESYADIRNGEIFILSMHISPYEQGNIFNVEPL
REKKLLLHKSEIHRLAGLVSRDGYTLIPLTLYLKAGKVKVALGICKGKKDYDKRDSMLEKAHNREMQRALKERSRY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=153, Percent_Identity=45.0980392156863, Blast_Score=135, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_CLOBA (B2UY12)

Other databases:

- EMBL:   CP001078
- RefSeq:   YP_001922179.1
- GeneID:   6317958
- GenomeReviews:   CP001078_GR
- KEGG:   cbt:CLH_2802
- HOGENOM:   HBG293422
- OMA:   GAHISEY
- ProtClustDB:   PRK05422
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17958; Mature: 17958

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRKKSSNTLAENRKARHEYFIEETIEAGIALVGTEVKSIRNGRANLKESYADIRNGEIF
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEE
ILSMHISPYEQGNIFNVEPLREKKLLLHKSEIHRLAGLVSRDGYTLIPLTLYLKAGKVKV
EEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEE
ALGICKGKKDYDKRDSMLEKAHNREMQRALKERSRY
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVRKKSSNTLAENRKARHEYFIEETIEAGIALVGTEVKSIRNGRANLKESYADIRNGEIF
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEE
ILSMHISPYEQGNIFNVEPLREKKLLLHKSEIHRLAGLVSRDGYTLIPLTLYLKAGKVKV
EEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEE
ALGICKGKKDYDKRDSMLEKAHNREMQRALKERSRY
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA