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The map label for this gene is yrbE [H]

Identifier: 187933465

GI number: 187933465

Start: 3293709

End: 3294812

Strand: Reverse

Name: yrbE [H]

Synonym: CLL_A3174

Alternate gene names: 187933465

Gene position: 3294812-3293709 (Counterclockwise)

Preceding gene: 187932756

Following gene: 187935752

Centisome position: 86.7

GC content: 32.16

Gene sequence:

>1104_bases
ATGAAAAAATTAAAATTTGCGATTATTGGTTGTGGAAGAATTTCTTATAAACATGTTGAGGCTCTATCAAAGAATTTTGA
AGAAGCAGAATTAGTTGCAACATGCGACGTTATGTTAGAAAAAGCAGAAGCAAAAAAAGCTGAATACATAGAAAAATGTG
GAGTAGCACAAGATGCTGTTCATGCATATTCAGATTACAAAGAAATGGTTGAAAAAGAAGATATAGATGTTGTTACAATA
GCTACTGAAAGTGGATATCATGCAGAAATAGCTATTTACTGTATGAAAAAAGGAATAAATACATTAATAGAAAAGCCAAT
GGCTATGTCAATTGAAGATGCTAATGAAATGATTAAAGTAGCAGAAGAAAACAATGTTAAGCTTGCAGTTTGTCATCAAA
ATAGATTTAATAAGCCAATTAAAAAGTTAAGAGAAGCTATTGAACAAAATAAATTCGGTAGATTAGTTAATGGTACAGCA
AGAATCCTTTGGAATAGAAATATGGGATACTATGAACAAGCGCCTTGGAGAGGAACTTGGGAATTAGATGGTGGAACATT
AATGAATCAATGTATACATAATATAGATTTACTTCAATGGATGATGGGCGGAGAAATTGAAAGAGTATACGCTGAATGTG
ATACTTATTTAAGAGACATTGAAGGGGAAGACTTTGGAGCAATAATTATAAGATTTAAAAATGGAGCTATTGGTATTGTT
GAAGGTTCAGCTTGTGTTTATCCAAAAAACTTGGAAGAAACATTAAGTATATTTGGAGAAAATGGAGCAGTTTGTATTGG
AGGCCTTGCAAACAATGAACTTGAAACTTGGAGATTTGATGGCGAAAATGAAGACGCTGTTAAAGAAGAAGTTAATGTTA
AAATAGACAATGTATACGGCGAAGGACACACGCCATTATTTAAAGACGTAATAGATGCTATAAATAATAATAGAAGGCCT
TTAATAGCCGGTGAAGAGGGAAGAAATGCTATGTCTATAATTCTTGCAGCATATAAATCAAGAAAGACTGGTATGCCAGT
GCAATTTCCATTAGAAAACTTTAGTACTTTAGATATGAGAGATGAGTTTAAAGGAAGAAAGTAA

Upstream 100 bases:

>100_bases
TTTAAGAAAAGTCTTTAAGACTTTTAACTAAAACTTTCAATTCTCATTTCTATACTTTCAACTAACAAGATTAAATATAT
AGAAAAGGTAGTGTAGTATT

Downstream 100 bases:

>100_bases
TTAGGATCTGTTTTAAATATGTATTGGTATACGCAATAGTTAAAGTGGCATTGTTCAATTACTCCGTCCACTTTGCATAT
ACATATATCAAAACTCTGTT

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MKKLKFAIIGCGRISYKHVEALSKNFEEAELVATCDVMLEKAEAKKAEYIEKCGVAQDAVHAYSDYKEMVEKEDIDVVTI
ATESGYHAEIAIYCMKKGINTLIEKPMAMSIEDANEMIKVAEENNVKLAVCHQNRFNKPIKKLREAIEQNKFGRLVNGTA
RILWNRNMGYYEQAPWRGTWELDGGTLMNQCIHNIDLLQWMMGGEIERVYAECDTYLRDIEGEDFGAIIIRFKNGAIGIV
EGSACVYPKNLEETLSIFGENGAVCIGGLANNELETWRFDGENEDAVKEEVNVKIDNVYGEGHTPLFKDVIDAINNNRRP
LIAGEEGRNAMSIILAAYKSRKTGMPVQFPLENFSTLDMRDEFKGRK

Sequences:

>Translated_367_residues
MKKLKFAIIGCGRISYKHVEALSKNFEEAELVATCDVMLEKAEAKKAEYIEKCGVAQDAVHAYSDYKEMVEKEDIDVVTI
ATESGYHAEIAIYCMKKGINTLIEKPMAMSIEDANEMIKVAEENNVKLAVCHQNRFNKPIKKLREAIEQNKFGRLVNGTA
RILWNRNMGYYEQAPWRGTWELDGGTLMNQCIHNIDLLQWMMGGEIERVYAECDTYLRDIEGEDFGAIIIRFKNGAIGIV
EGSACVYPKNLEETLSIFGENGAVCIGGLANNELETWRFDGENEDAVKEEVNVKIDNVYGEGHTPLFKDVIDAINNNRRP
LIAGEEGRNAMSIILAAYKSRKTGMPVQFPLENFSTLDMRDEFKGRK
>Mature_367_residues
MKKLKFAIIGCGRISYKHVEALSKNFEEAELVATCDVMLEKAEAKKAEYIEKCGVAQDAVHAYSDYKEMVEKEDIDVVTI
ATESGYHAEIAIYCMKKGINTLIEKPMAMSIEDANEMIKVAEENNVKLAVCHQNRFNKPIKKLREAIEQNKFGRLVNGTA
RILWNRNMGYYEQAPWRGTWELDGGTLMNQCIHNIDLLQWMMGGEIERVYAECDTYLRDIEGEDFGAIIIRFKNGAIGIV
EGSACVYPKNLEETLSIFGENGAVCIGGLANNELETWRFDGENEDAVKEEVNVKIDNVYGEGHTPLFKDVIDAINNNRRP
LIAGEEGRNAMSIILAAYKSRKTGMPVQFPLENFSTLDMRDEFKGRK

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1787574, Length=263, Percent_Identity=28.5171102661597, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI87082405, Length=265, Percent_Identity=25.6603773584906, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24581117, Length=209, Percent_Identity=24.8803827751196, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 41451; Mature: 41451

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLKFAIIGCGRISYKHVEALSKNFEEAELVATCDVMLEKAEAKKAEYIEKCGVAQDAV
CCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
HAYSDYKEMVEKEDIDVVTIATESGYHAEIAIYCMKKGINTLIEKPMAMSIEDANEMIKV
HHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHCCCCEEEHHHHHHHHHH
AEENNVKLAVCHQNRFNKPIKKLREAIEQNKFGRLVNGTARILWNRNMGYYEQAPWRGTW
HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHCCEEEEEEECCCCCCCCCCCCEEE
ELDGGTLMNQCIHNIDLLQWMMGGEIERVYAECDTYLRDIEGEDFGAIIIRFKNGAIGIV
EECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEE
EGSACVYPKNLEETLSIFGENGAVCIGGLANNELETWRFDGENEDAVKEEVNVKIDNVYG
ECCEEECCCCHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCHHHHHHCCEEEEEEEC
EGHTPLFKDVIDAINNNRRPLIAGEEGRNAMSIILAAYKSRKTGMPVQFPLENFSTLDMR
CCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCH
DEFKGRK
HHCCCCC
>Mature Secondary Structure
MKKLKFAIIGCGRISYKHVEALSKNFEEAELVATCDVMLEKAEAKKAEYIEKCGVAQDAV
CCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
HAYSDYKEMVEKEDIDVVTIATESGYHAEIAIYCMKKGINTLIEKPMAMSIEDANEMIKV
HHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHCCCCEEEHHHHHHHHHH
AEENNVKLAVCHQNRFNKPIKKLREAIEQNKFGRLVNGTARILWNRNMGYYEQAPWRGTW
HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHCCEEEEEEECCCCCCCCCCCCEEE
ELDGGTLMNQCIHNIDLLQWMMGGEIERVYAECDTYLRDIEGEDFGAIIIRFKNGAIGIV
EECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEE
EGSACVYPKNLEETLSIFGENGAVCIGGLANNELETWRFDGENEDAVKEEVNVKIDNVYG
ECCEEECCCCHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCHHHHHHCCEEEEEEEC
EGHTPLFKDVIDAINNNRRPLIAGEEGRNAMSIILAAYKSRKTGMPVQFPLENFSTLDMR
CCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCH
DEFKGRK
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]