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The map label for this gene is gidB [H]

Identifier: 187933315

GI number: 187933315

Start: 3793407

End: 3794126

Strand: Reverse

Name: gidB [H]

Synonym: CLL_A3598

Alternate gene names: 187933315

Gene position: 3794126-3793407 (Counterclockwise)

Preceding gene: 187933395

Following gene: 187935625

Centisome position: 99.84

GC content: 29.44

Gene sequence:

>720_bases
ATGAAATTTTATGATTTAATGTGCAAAGCGGCACAAGATGTAGGGTTAGAATTATCAAAAGAGCAATATGAGAAGTTTAT
AATATATAAAAATCTTCTTCAAGAGTGGAATGAGAAAGTAAATTTAACAGCTATTACAGAAGATGAAGAGATAATAAAGA
AACACTTCATAGATTCTATTAAGGCATTTAAGAGAGATGAATTTAAAGAAGCAAAAACTCTAATAGATGTAGGAACTGGA
GCTGGTTTTCCAGGAATACCAGTAGCTATTATGAATGAAAATATACAAGTTACTTTATTAGATTCATTAAATAAGAGAGT
TAATTTCTTAAATTTAGTAACAGAAAAATTAGGCTTAAAAAATGTAGTTGCTATCCATTCAAGAGCTGAAGATGGAGCTA
GACAAAAAAATCTTAGAGAATCTTTTGATATAGCCACATCTAGAGCAGTTGCAAATATGAGTGTTTTATCTGAATTTTGT
TTACCATATGTTAAAATTAATGGTCATTTTATAGCTTTAAAAGGTCCAGCAGTAGAAGAAGAGATAAAGGATTCAGACAA
GGCTATAACCACCTTAGGAGGACAACTATTAGATATATGTGAGGTTGAAATTGAAGATACTGAATTAAAACATAACTTAG
TTGTTGTTAAGAAGATAAAAGAGTGTCCTAAAGCATATCCAAGAAAAGCAGGTAATGTTACTAAAAAGCCTATAAAATAG

Upstream 100 bases:

>100_bases
AGGTCAGGCATCACGTATTTCAGGGGTATCTCCAGCAGATATATCTGTATTACTTATTTATCTTGAACATTACTATAATA
AATAATTATTGGAGGTATTT

Downstream 100 bases:

>100_bases
TGTAAATATAATTTTATAATTATTTTACATAAGTTTTATTATTAAATAACTAATTTATATTTTGGGGATTTATTCAAATA
TAATTTGTATATTATTAGAT

Product: 16S rRNA methyltransferase GidB

Products: NA

Alternate protein names: 16S rRNA 7-methylguanosine methyltransferase; 16S rRNA m7G methyltransferase [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKFYDLMCKAAQDVGLELSKEQYEKFIIYKNLLQEWNEKVNLTAITEDEEIIKKHFIDSIKAFKRDEFKEAKTLIDVGTG
AGFPGIPVAIMNENIQVTLLDSLNKRVNFLNLVTEKLGLKNVVAIHSRAEDGARQKNLRESFDIATSRAVANMSVLSEFC
LPYVKINGHFIALKGPAVEEEIKDSDKAITTLGGQLLDICEVEIEDTELKHNLVVVKKIKECPKAYPRKAGNVTKKPIK

Sequences:

>Translated_239_residues
MKFYDLMCKAAQDVGLELSKEQYEKFIIYKNLLQEWNEKVNLTAITEDEEIIKKHFIDSIKAFKRDEFKEAKTLIDVGTG
AGFPGIPVAIMNENIQVTLLDSLNKRVNFLNLVTEKLGLKNVVAIHSRAEDGARQKNLRESFDIATSRAVANMSVLSEFC
LPYVKINGHFIALKGPAVEEEIKDSDKAITTLGGQLLDICEVEIEDTELKHNLVVVKKIKECPKAYPRKAGNVTKKPIK
>Mature_239_residues
MKFYDLMCKAAQDVGLELSKEQYEKFIIYKNLLQEWNEKVNLTAITEDEEIIKKHFIDSIKAFKRDEFKEAKTLIDVGTG
AGFPGIPVAIMNENIQVTLLDSLNKRVNFLNLVTEKLGLKNVVAIHSRAEDGARQKNLRESFDIATSRAVANMSVLSEFC
LPYVKINGHFIALKGPAVEEEIKDSDKAITTLGGQLLDICEVEIEDTELKHNLVVVKKIKECPKAYPRKAGNVTKKPIK

Specific function: Specifically methylates the N7 position of a guanosine in 16S rRNA [H]

COG id: COG0357

COG function: function code M; Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA methyltransferase rsmG family [H]

Homologues:

Organism=Escherichia coli, GI1790179, Length=206, Percent_Identity=33.9805825242718, Blast_Score=121, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003682 [H]

Pfam domain/function: PF02527 GidB [H]

EC number: 2.1.-.-

Molecular weight: Translated: 26924; Mature: 26924

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFYDLMCKAAQDVGLELSKEQYEKFIIYKNLLQEWNEKVNLTAITEDEEIIKKHFIDSI
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
KAFKRDEFKEAKTLIDVGTGAGFPGIPVAIMNENIQVTLLDSLNKRVNFLNLVTEKLGLK
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCHH
NVVAIHSRAEDGARQKNLRESFDIATSRAVANMSVLSEFCLPYVKINGHFIALKGPAVEE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCHHH
EIKDSDKAITTLGGQLLDICEVEIEDTELKHNLVVVKKIKECPKAYPRKAGNVTKKPIK
HHHCCHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKFYDLMCKAAQDVGLELSKEQYEKFIIYKNLLQEWNEKVNLTAITEDEEIIKKHFIDSI
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
KAFKRDEFKEAKTLIDVGTGAGFPGIPVAIMNENIQVTLLDSLNKRVNFLNLVTEKLGLK
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCHH
NVVAIHSRAEDGARQKNLRESFDIATSRAVANMSVLSEFCLPYVKINGHFIALKGPAVEE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCHHH
EIKDSDKAITTLGGQLLDICEVEIEDTELKHNLVVVKKIKECPKAYPRKAGNVTKKPIK
HHHCCHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA