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The map label for this gene is xseB

Identifier: 187933296

GI number: 187933296

Start: 2495277

End: 2495501

Strand: Reverse

Name: xseB

Synonym: CLL_A2403

Alternate gene names: 187933296

Gene position: 2495501-2495277 (Counterclockwise)

Preceding gene: 187934773

Following gene: 187932330

Centisome position: 65.67

GC content: 27.11

Gene sequence:

>225_bases
ATGGCAAAGAAAGAAAGCTATGAAGATATGCTTGGTAAGCTTCAAGATATTTTAAGTACTTTAGAAGATGACAATTTAAA
CCTTGAAGAGGGTATGAAATCTTATGAAGATGGAGTAAAATTAGTAAATAAACTTTATAAAACTTTAAATTCATATGAAG
GAAAAATATCTGTAATTAAGGAAGAAAAAGAAGTGGAGTTTGAAAATCAAGATGGAGATAGATAA

Upstream 100 bases:

>100_bases
AGAAATATCGCAATTAAACGAAGAAAAAGAAATAAGTGTTTCTTTAAGTGATGGAAATATTAAAGGGAATTTTATACCTA
TTAAGTAAGGAGAGTATTAT

Downstream 100 bases:

>100_bases
TTTAAAAAATGTAATAGATGAATATTTAAAAAATTATTTTATAAATAGAAATTCTTATAATAAGGTTGTTTATGAGTCAG
CAGGATATAGTGTAAATATA

Product: hypothetical protein

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 74; Mature: 73

Protein sequence:

>74_residues
MAKKESYEDMLGKLQDILSTLEDDNLNLEEGMKSYEDGVKLVNKLYKTLNSYEGKISVIKEEKEVEFENQDGDR

Sequences:

>Translated_74_residues
MAKKESYEDMLGKLQDILSTLEDDNLNLEEGMKSYEDGVKLVNKLYKTLNSYEGKISVIKEEKEVEFENQDGDR
>Mature_73_residues
AKKESYEDMLGKLQDILSTLEDDNLNLEEGMKSYEDGVKLVNKLYKTLNSYEGKISVIKEEKEVEFENQDGDR

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_CLOBA (B2V4R5)

Other databases:

- EMBL:   CP001078
- RefSeq:   YP_001921549.1
- GeneID:   6320256
- GenomeReviews:   CP001078_GR
- KEGG:   cbt:CLH_2168
- HOGENOM:   HBG728416
- OMA:   LENIVAS
- ProtClustDB:   CLSK2327075
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8580; Mature: 8448

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKESYEDMLGKLQDILSTLEDDNLNLEEGMKSYEDGVKLVNKLYKTLNSYEGKISVIK
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EEKEVEFENQDGDR
CHHHCCCCCCCCCC
>Mature Secondary Structure 
AKKESYEDMLGKLQDILSTLEDDNLNLEEGMKSYEDGVKLVNKLYKTLNSYEGKISVIK
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EEKEVEFENQDGDR
CHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA