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The map label for this gene is glcT [H]

Identifier: 187932982

GI number: 187932982

Start: 3614392

End: 3615246

Strand: Reverse

Name: glcT [H]

Synonym: CLL_A3424

Alternate gene names: 187932982

Gene position: 3615246-3614392 (Counterclockwise)

Preceding gene: 187932946

Following gene: 187933951

Centisome position: 95.13

GC content: 25.73

Gene sequence:

>855_bases
ATGACAATAATACTTAATAAAAGCGAAGTAGTGTCAAAGGTTTTTAACAATAATATAGTTTTAGTTGATTCATCTGATAA
AGAAAAAATACTTTTTGCTAAAGGTATAGGATTTGGAAAAAAACCAGGTCATGTGATATCTGAAAATACAGAAATAGAAA
AAATATTTACAATAGAAAACAAAGAAAATATAAAAAGTCTTCAAGGTATGATAGAAAAAATTGATGATGAGTTCTTTGCT
GTTTGTGAAGAAGCTATATATGAAATATCTAAACAATTGAATGAAGAATTAAATGAACATATACACATTGGGCTAATAGA
TCATTTATTTTTTGCGGTTAAAAGAATGAAAAATAATGAACAAATAGAAAACCCTTTTTTAATTGAAACAGAAACTTTAT
ATTCAGAAGAATTTAGATTGGCTAAAATAGTGGCAGAAAGAGTTGGGAACTATTCAAATGTATTTATACCTGATGGTGAA
GTTGCGTTTATAGCTCTTCATATACATTCTTCATTAAATAATGGAAAACTTTCTAATACAATAAGAAATACTTATGTAAG
TAGCAATATAGCTGAATATGTTGAGGAAAGATTAGGAATAAAGATAAATAAGAAATCTTTAGATTATGCAAGATTTTGTA
CTCATATTAAATTTGCACTTCAAAGAATAATGGATAATACAAGTGTTCATAACGACTTATCTAGAATTATAAAGAAGACT
TACAAGGAATCATATTCAATATCACAAGGAATTGCTAAGATTATTGAAGAGGAATTTAAAGTTAAAGTGACAAAAGATGA
AATTGCATTTTTAACTATTCATGTGGAAAGATTCAAGGCATCTAAAGTTAATTAA

Upstream 100 bases:

>100_bases
AAATTTAGTTTAAAACCTGTAATTACAATTAGATTTAATGGTATAATTTAGATATGAGTTATAATAAATAATAGATTTTG
TATATAGAAAGGATAGTGAA

Downstream 100 bases:

>100_bases
AAATTTACAAAAAGCGAATGATATGATATCATATTCATATTATTAAGGTGTAACTGGTAATGCAGGCAAGACTTAATATA
AGTAAAGAAAAATTTATTAC

Product: transcription antiterminator LicT

Products: NA

Alternate protein names: RNA-binding antitermination protein GlcT [H]

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MTIILNKSEVVSKVFNNNIVLVDSSDKEKILFAKGIGFGKKPGHVISENTEIEKIFTIENKENIKSLQGMIEKIDDEFFA
VCEEAIYEISKQLNEELNEHIHIGLIDHLFFAVKRMKNNEQIENPFLIETETLYSEEFRLAKIVAERVGNYSNVFIPDGE
VAFIALHIHSSLNNGKLSNTIRNTYVSSNIAEYVEERLGIKINKKSLDYARFCTHIKFALQRIMDNTSVHNDLSRIIKKT
YKESYSISQGIAKIIEEEFKVKVTKDEIAFLTIHVERFKASKVN

Sequences:

>Translated_284_residues
MTIILNKSEVVSKVFNNNIVLVDSSDKEKILFAKGIGFGKKPGHVISENTEIEKIFTIENKENIKSLQGMIEKIDDEFFA
VCEEAIYEISKQLNEELNEHIHIGLIDHLFFAVKRMKNNEQIENPFLIETETLYSEEFRLAKIVAERVGNYSNVFIPDGE
VAFIALHIHSSLNNGKLSNTIRNTYVSSNIAEYVEERLGIKINKKSLDYARFCTHIKFALQRIMDNTSVHNDLSRIIKKT
YKESYSISQGIAKIIEEEFKVKVTKDEIAFLTIHVERFKASKVN
>Mature_283_residues
TIILNKSEVVSKVFNNNIVLVDSSDKEKILFAKGIGFGKKPGHVISENTEIEKIFTIENKENIKSLQGMIEKIDDEFFAV
CEEAIYEISKQLNEELNEHIHIGLIDHLFFAVKRMKNNEQIENPFLIETETLYSEEFRLAKIVAERVGNYSNVFIPDGEV
AFIALHIHSSLNNGKLSNTIRNTYVSSNIAEYVEERLGIKINKKSLDYARFCTHIKFALQRIMDNTSVHNDLSRIIKKTY
KESYSISQGIAKIIEEEFKVKVTKDEIAFLTIHVERFKASKVN

Specific function: Mediates the positive regulation of the glucose PTS operon (ptsGHI) by functioning as an antiterminator factor of transcription via its interaction with the RNA-antiterminator (RAT) sequence located upstream of the ptsG gene. The RNA-binding domain of Glc

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=277, Percent_Identity=30.6859205776173, Blast_Score=147, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32638; Mature: 32507

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIILNKSEVVSKVFNNNIVLVDSSDKEKILFAKGIGFGKKPGHVISENTEIEKIFTIEN
CEEEECHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCEECCCCCEEEEEEECC
KENIKSLQGMIEKIDDEFFAVCEEAIYEISKQLNEELNEHIHIGLIDHLFFAVKRMKNNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHCCCC
QIENPFLIETETLYSEEFRLAKIVAERVGNYSNVFIPDGEVAFIALHIHSSLNNGKLSNT
CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEEECCCCCCHHHHH
IRNTYVSSNIAEYVEERLGIKINKKSLDYARFCTHIKFALQRIMDNTSVHNDLSRIIKKT
HHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
YKESYSISQGIAKIIEEEFKVKVTKDEIAFLTIHVERFKASKVN
HHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEEHHHCCCCC
>Mature Secondary Structure 
TIILNKSEVVSKVFNNNIVLVDSSDKEKILFAKGIGFGKKPGHVISENTEIEKIFTIEN
EEEECHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCEECCCCCEEEEEEECC
KENIKSLQGMIEKIDDEFFAVCEEAIYEISKQLNEELNEHIHIGLIDHLFFAVKRMKNNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHCCCC
QIENPFLIETETLYSEEFRLAKIVAERVGNYSNVFIPDGEVAFIALHIHSSLNNGKLSNT
CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEEECCCCCCHHHHH
IRNTYVSSNIAEYVEERLGIKINKKSLDYARFCTHIKFALQRIMDNTSVHNDLSRIIKKT
HHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
YKESYSISQGIAKIIEEEFKVKVTKDEIAFLTIHVERFKASKVN
HHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902727; 9384377 [H]