Click here to switch to the map view.

The map label for this gene is hypA [H]

Identifier: 187932743

GI number: 187932743

Start: 2086260

End: 2086601

Strand: Reverse

Name: hypA [H]

Synonym: CLL_A2005

Alternate gene names: 187932743

Gene position: 2086601-2086260 (Counterclockwise)

Preceding gene: 187933519

Following gene: 187932358

Centisome position: 54.91

GC content: 24.27

Gene sequence:

>342_bases
ATGCATGAAGTTTCAATTGTTGAAGAAATAATCAATACAGTTGAAGAAATTTGTAACTTAAATAATATAAGCAATGTGAG
TAAAATAATTTTAAGTGTTGGAGAGTTTGTATATTTAGATAAAAAATCTGTTGACTTTATTTTTGGACTTTTAAAAAAAG
ATACACTATGTAAAAATGCTATTTTAGAAATAAAAGAATCAAAGGCTATGGCTTATTGTGAAAAATGTAGGGAAAATTTT
AAAATATCCTTTACTGAAAAAAATTGTCCTACATGTAAAACTTATAGTTCTAATATAGTAAGCGGTTATGAAACTATATT
AGAGCAAATAGAAGGGGAATAA

Upstream 100 bases:

>100_bases
AAACTAATTTACATGGAATTAAAAAAAGCTGTATAAATAAACATTTTTATTTATATATAAGCATTATGTTTAAGCAATCA
AAATAAAAGGATATGATTTA

Downstream 100 bases:

>100_bases
TTTAGTGAAAATATATGATTAAGAGAAAATATATTTTGGTAAATGGAAGAGTTCAAGGCGTTGGATTTAGGCCTTTTGTA
TATAGAATTGCATGTAAAAA

Product: hydrogenase expression/synthesis, HypA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MHEVSIVEEIINTVEEICNLNNISNVSKIILSVGEFVYLDKKSVDFIFGLLKKDTLCKNAILEIKESKAMAYCEKCRENF
KISFTEKNCPTCKTYSSNIVSGYETILEQIEGE

Sequences:

>Translated_113_residues
MHEVSIVEEIINTVEEICNLNNISNVSKIILSVGEFVYLDKKSVDFIFGLLKKDTLCKNAILEIKESKAMAYCEKCRENF
KISFTEKNCPTCKTYSSNIVSGYETILEQIEGE
>Mature_113_residues
MHEVSIVEEIINTVEEICNLNNISNVSKIILSVGEFVYLDKKSVDFIFGLLKKDTLCKNAILEIKESKAMAYCEKCRENF
KISFTEKNCPTCKTYSSNIVSGYETILEQIEGE

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688
- InterPro:   IPR020538 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 12855; Mature: 12855

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEVSIVEEIINTVEEICNLNNISNVSKIILSVGEFVYLDKKSVDFIFGLLKKDTLCKNA
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHH
ILEIKESKAMAYCEKCRENFKISFTEKNCPTCKTYSSNIVSGYETILEQIEGE
HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHEVSIVEEIINTVEEICNLNNISNVSKIILSVGEFVYLDKKSVDFIFGLLKKDTLCKNA
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHH
ILEIKESKAMAYCEKCRENFKISFTEKNCPTCKTYSSNIVSGYETILEQIEGE
HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA