Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 187932650

GI number: 187932650

Start: 940841

End: 942001

Strand: Reverse

Name: xerD [C]

Synonym: CLL_A0918

Alternate gene names: 187932650

Gene position: 942001-940841 (Counterclockwise)

Preceding gene: 187935146

Following gene: 187932623

Centisome position: 24.79

GC content: 24.29

Gene sequence:

>1161_bases
ATGAATGGTAGTGTAAGAAAAAAAGGTAATGTATGGTACTATCGTTACTATGAGTATGTAAATGGAGTAAAAAAACAAAT
TGAAAGAAAAGGAGGTATTACAAAAAAAGAAGCCCTTCAAAAACTTAATGAAGAAATTTATAGACAAAATAATGGTCTTT
TAAAACCAAAAGAAATATTATTAAAAGATTATCTGAAGATTTGGTTAGAAGACTATGTTAAACCTAATAACAGCGAAAAC
ACCTATATTAAATATAAAGGAACTGTTAATAAATATATTAATCCTCAATTAGGATTAATAAAATTATGCGATTTAAAAGT
AATTAATATTGAACAATTCTTATCTAAATTAAAAAAGACTAAATTAAGTTTAACTACAATTCAAAAGCATTATTTAGTTT
TAAATGGAGCATTAAATAAAGCAATAAAATTGCAAATGTTAAATGATAATCCTTGTAAATATGTAGACACTCCAAAACGT
AGTAAATATAAAGCAAGTATATTGACATTTGAAGAGTTACATTCAATATATACTAATTTAAACACTAAAATTTATGAAGA
CTATATAATGAAATTAGGAATGGATTTAACTATCGAAACTGGTTTAAGACGTGGTGAAATGTGCGGACTTCAGTGGAGTG
ATATTGACTTTGATAATAAAATCCTTAATGTAAATACCGCTCTAATAAGAGTTAATAATGACTATAAAATATCAAATCTA
AAAACTGATTCATCTTATAGAAAGTTGCCTTTAAGCAATGAAATAATAAAAATATTAAAATCACATAAATCTAAACAAAA
TATTAATAAAATAAAGTATGGAAATAATTTTGTTTATAGTAATAAGTTTGATGGAGATTCAACTGAATATAATCTCATAT
TTACTTGGGAAAACGGTAGATATATAATCCCATCCAACTTTTTACAAAGATTAAAAAGATTATGTAAATATTGTAAAATA
GAAAAAAATATTCGTTGGCATGATCTTAGACATAGCAATGCCACTATATTATTAAAAAATAAAATTTCTATGAAAGTGAT
TCAGGAAAGATTGGGGCATTCTCTTATGCAAACAACATCAGATATTTATGCACATGTTACTGAAGAAATGAATCGAGAAG
CTACTGATGTTATATCCAATGTTTTATACAATAAAAAATAA

Upstream 100 bases:

>100_bases
TCAAATTTCCAGTTGTATAAATGTTCCTTTCGAAGCTTTATCTCAACTGGTTAATTTATAAATATAAATAGAACATATGT
TCTAAAGGGAGTTGAAAATT

Downstream 100 bases:

>100_bases
CAAGGGAAGGATAAGGGCAAATTCTCTTATTCATTCATCCAAGCCTTGTTATTACTTATGCGAGACAAGCCGTAAGCGGG
GTTCTGTATTAAGCAATCAT

Product: prophage LambdaBa04, site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MNGSVRKKGNVWYYRYYEYVNGVKKQIERKGGITKKEALQKLNEEIYRQNNGLLKPKEILLKDYLKIWLEDYVKPNNSEN
TYIKYKGTVNKYINPQLGLIKLCDLKVINIEQFLSKLKKTKLSLTTIQKHYLVLNGALNKAIKLQMLNDNPCKYVDTPKR
SKYKASILTFEELHSIYTNLNTKIYEDYIMKLGMDLTIETGLRRGEMCGLQWSDIDFDNKILNVNTALIRVNNDYKISNL
KTDSSYRKLPLSNEIIKILKSHKSKQNINKIKYGNNFVYSNKFDGDSTEYNLIFTWENGRYIIPSNFLQRLKRLCKYCKI
EKNIRWHDLRHSNATILLKNKISMKVIQERLGHSLMQTTSDIYAHVTEEMNREATDVISNVLYNKK

Sequences:

>Translated_386_residues
MNGSVRKKGNVWYYRYYEYVNGVKKQIERKGGITKKEALQKLNEEIYRQNNGLLKPKEILLKDYLKIWLEDYVKPNNSEN
TYIKYKGTVNKYINPQLGLIKLCDLKVINIEQFLSKLKKTKLSLTTIQKHYLVLNGALNKAIKLQMLNDNPCKYVDTPKR
SKYKASILTFEELHSIYTNLNTKIYEDYIMKLGMDLTIETGLRRGEMCGLQWSDIDFDNKILNVNTALIRVNNDYKISNL
KTDSSYRKLPLSNEIIKILKSHKSKQNINKIKYGNNFVYSNKFDGDSTEYNLIFTWENGRYIIPSNFLQRLKRLCKYCKI
EKNIRWHDLRHSNATILLKNKISMKVIQERLGHSLMQTTSDIYAHVTEEMNREATDVISNVLYNKK
>Mature_386_residues
MNGSVRKKGNVWYYRYYEYVNGVKKQIERKGGITKKEALQKLNEEIYRQNNGLLKPKEILLKDYLKIWLEDYVKPNNSEN
TYIKYKGTVNKYINPQLGLIKLCDLKVINIEQFLSKLKKTKLSLTTIQKHYLVLNGALNKAIKLQMLNDNPCKYVDTPKR
SKYKASILTFEELHSIYTNLNTKIYEDYIMKLGMDLTIETGLRRGEMCGLQWSDIDFDNKILNVNTALIRVNNDYKISNL
KTDSSYRKLPLSNEIIKILKSHKSKQNINKIKYGNNFVYSNKFDGDSTEYNLIFTWENGRYIIPSNFLQRLKRLCKYCKI
EKNIRWHDLRHSNATILLKNKISMKVIQERLGHSLMQTTSDIYAHVTEEMNREATDVISNVLYNKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45464; Mature: 45464

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGSVRKKGNVWYYRYYEYVNGVKKQIERKGGITKKEALQKLNEEIYRQNNGLLKPKEIL
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
LKDYLKIWLEDYVKPNNSENTYIKYKGTVNKYINPQLGLIKLCDLKVINIEQFLSKLKKT
HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECEEEECHHHHHHHHHHH
KLSLTTIQKHYLVLNGALNKAIKLQMLNDNPCKYVDTPKRSKYKASILTFEELHSIYTNL
HHHHHHHHHHHEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
NTKIYEDYIMKLGMDLTIETGLRRGEMCGLQWSDIDFDNKILNVNTALIRVNNDYKISNL
CHHHHHHHHHHCCCCEEECCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEECCCEEEEEE
KTDSSYRKLPLSNEIIKILKSHKSKQNINKIKYGNNFVYSNKFDGDSTEYNLIFTWENGR
ECCCCCCCCCCHHHHHHHHHHHCCHHCCCCEECCCEEEECCCCCCCCCEEEEEEEECCCC
YIIPSNFLQRLKRLCKYCKIEKNIRWHDLRHSNATILLKNKISMKVIQERLGHSLMQTTS
EECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
DIYAHVTEEMNREATDVISNVLYNKK
HHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MNGSVRKKGNVWYYRYYEYVNGVKKQIERKGGITKKEALQKLNEEIYRQNNGLLKPKEIL
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
LKDYLKIWLEDYVKPNNSENTYIKYKGTVNKYINPQLGLIKLCDLKVINIEQFLSKLKKT
HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECEEEECHHHHHHHHHHH
KLSLTTIQKHYLVLNGALNKAIKLQMLNDNPCKYVDTPKRSKYKASILTFEELHSIYTNL
HHHHHHHHHHHEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
NTKIYEDYIMKLGMDLTIETGLRRGEMCGLQWSDIDFDNKILNVNTALIRVNNDYKISNL
CHHHHHHHHHHCCCCEEECCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEECCCEEEEEE
KTDSSYRKLPLSNEIIKILKSHKSKQNINKIKYGNNFVYSNKFDGDSTEYNLIFTWENGR
ECCCCCCCCCCHHHHHHHHHHHCCHHCCCCEECCCEEEECCCCCCCCCEEEEEEEECCCC
YIIPSNFLQRLKRLCKYCKIEKNIRWHDLRHSNATILLKNKISMKVIQERLGHSLMQTTS
EECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
DIYAHVTEEMNREATDVISNVLYNKK
HHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]