| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is pgcA [H]
Identifier: 187932543
GI number: 187932543
Start: 2546963
End: 2548690
Strand: Reverse
Name: pgcA [H]
Synonym: CLL_A2461
Alternate gene names: 187932543
Gene position: 2548690-2546963 (Counterclockwise)
Preceding gene: 187935547
Following gene: 187935614
Centisome position: 67.07
GC content: 27.55
Gene sequence:
>1728_bases ATGGATTATAAAGAAAAATATAACTCATGGATTAATTCTGAGAGTATAAATGAAGAAACAAAGAATGAATTAAAAGCAAT ATGTGATGAAAAAGAAATAGAAGATAGATTTTATAAAGATTTAGAATTTGGTACAGGTGGATTAAGAGGTGTAATTGGAG CTGGAAGCAATAGAATGAATGTATATAGTGTTTCAAAAGCAACTCAAGGTTTTGCTAATTACTTAAATGAAAACTTTAAT AAACCAGCAGTTGCAATTGCATATGATTCTAGAAATATGTCAAAAGAATTTGCTAAGGCAGCAGCACTTACATTATGCGC TAACAATGTAAAAGTATACTTATATGAAAGTTTAAGACCAACACCAGTTTTATCTTTTGCTACAAGAGAACTAAAATGTA GTGGTGGAATAGTTGTAACTGCTTCACATAATCCAAAACAATACAATGGATATAAGGTTTATGATGAATTTGGAGGACAA GTTACAGATGACAAAGCTAACAAAATAATAACTTGTGTTAACCAAATTGAAGATTTTTCACAAATTAAAATTATAGATGA AAAAGATGCGTTAGAAAAAGGTTTACTTGAATATGTAGGTGAAGAATTAGATAAAACTTATATGGAAAAAGTAAAATCTT TAACTATTAGAAAAGAATTAGTTAGTGAAAAAGCTAATACTTTAAATGTTATATATACTCCAATTCATGGATCAGGTAAT GTTCCAGTTAGAAGAGTATTAAAAGAATTAGGATATACAAATGTAGAAGTTGTAAAAGAACAAGAAGCTCCAGATGGAAA CTTTCCAACAGCATCTTATCCTAATCCAGAAAATCCAGATGTATTTAAATTAGCTTTAAATATGGCACAAAGCACAAATC CAGATATAATATTTGGAACAGATCCAGATTGTGATAGAATTGGTGTTGTTGTAAAAGACAGCAAAGGTGAATATAAAGTT TTAACTGGTAACCAAACCGGATTATTATTAACTCATTATATATTAAGTTCATTAAAAGAAACTAATAAGTTACCTGAAAA TGGAGTAGTTATTAAGACAATAGTAACTACGGAAGGTGCTAAAGCAATTGCTGATGATTTTAATATAGAAATATTAGATG TACTAACTGGATTTAAATATATAGGAGAAAAGATAAGAGAATTTAAAGAATCAGGGGAATATACTTACTTATTTGGATTT GAAGAAAGTTATGGATATCTTGCAGGAGACTTTGTTCGTGATAAAGATGCAGTAATAGCTTCAATGTTAATATGTGAAAT GTGCTTATATTATAAAGAACATGGTAAGAGTTTATATGATGCTTTAATAGAATTATATGAAAAATATGGATACTTTAAAG AAACTCTTGTATCTCTAGAATTAGCAGGAAAAGAAGGTCAAGAAAAAATTGCTTCTTGTATAGATGCTATGAGAAATAGT AATATAACTGAAATTAACAATGTAAAAGTAGTTAAAAAGTTAGATTATAAATTAAGTACAGATGAGGATATTATAAATGG TACTAAGGTAGCAATTAATTTACCAAAATCAAATGTATTAAAGTTTATACTTGAAGATGATTCTTATTTTGTAGTTAGAC CATCAGGAACTGAGCCAAAGATGAAGGTTTATTTATCTATTAAGGGAAATAGCGTGACTGATGCAGAAAAACAAATATCA GAATTTAAAGAAAATGTTATGAATTTAATTAATGAAAAATTAAACTAA
Upstream 100 bases:
>100_bases TATGGTTAAGTATTGTATAATAATAGGAGTATTAAGTAAAATTTTGTTAAGTTAGTATAAATGTTTAACAAATGATTTAT ACAAATGGGAGGGAACATAT
Downstream 100 bases:
>100_bases ATTAATTCTACAAATAAGCTGTTTTAAGTGATATAATAATCATTTGAGACAGCTTTTGTCTTAAATACTATCAAGATAAA ATTAGGTGGTGTAACGTAAT
Product: phosphomannomutase
Products: NA
Alternate protein names: PGM; Alpha-phosphoglucomutase; Glucose phosphomutase [H]
Number of amino acids: Translated: 575; Mature: 575
Protein sequence:
>575_residues MDYKEKYNSWINSESINEETKNELKAICDEKEIEDRFYKDLEFGTGGLRGVIGAGSNRMNVYSVSKATQGFANYLNENFN KPAVAIAYDSRNMSKEFAKAAALTLCANNVKVYLYESLRPTPVLSFATRELKCSGGIVVTASHNPKQYNGYKVYDEFGGQ VTDDKANKIITCVNQIEDFSQIKIIDEKDALEKGLLEYVGEELDKTYMEKVKSLTIRKELVSEKANTLNVIYTPIHGSGN VPVRRVLKELGYTNVEVVKEQEAPDGNFPTASYPNPENPDVFKLALNMAQSTNPDIIFGTDPDCDRIGVVVKDSKGEYKV LTGNQTGLLLTHYILSSLKETNKLPENGVVIKTIVTTEGAKAIADDFNIEILDVLTGFKYIGEKIREFKESGEYTYLFGF EESYGYLAGDFVRDKDAVIASMLICEMCLYYKEHGKSLYDALIELYEKYGYFKETLVSLELAGKEGQEKIASCIDAMRNS NITEINNVKVVKKLDYKLSTDEDIINGTKVAINLPKSNVLKFILEDDSYFVVRPSGTEPKMKVYLSIKGNSVTDAEKQIS EFKENVMNLINEKLN
Sequences:
>Translated_575_residues MDYKEKYNSWINSESINEETKNELKAICDEKEIEDRFYKDLEFGTGGLRGVIGAGSNRMNVYSVSKATQGFANYLNENFN KPAVAIAYDSRNMSKEFAKAAALTLCANNVKVYLYESLRPTPVLSFATRELKCSGGIVVTASHNPKQYNGYKVYDEFGGQ VTDDKANKIITCVNQIEDFSQIKIIDEKDALEKGLLEYVGEELDKTYMEKVKSLTIRKELVSEKANTLNVIYTPIHGSGN VPVRRVLKELGYTNVEVVKEQEAPDGNFPTASYPNPENPDVFKLALNMAQSTNPDIIFGTDPDCDRIGVVVKDSKGEYKV LTGNQTGLLLTHYILSSLKETNKLPENGVVIKTIVTTEGAKAIADDFNIEILDVLTGFKYIGEKIREFKESGEYTYLFGF EESYGYLAGDFVRDKDAVIASMLICEMCLYYKEHGKSLYDALIELYEKYGYFKETLVSLELAGKEGQEKIASCIDAMRNS NITEINNVKVVKKLDYKLSTDEDIINGTKVAINLPKSNVLKFILEDDSYFVVRPSGTEPKMKVYLSIKGNSVTDAEKQIS EFKENVMNLINEKLN >Mature_575_residues MDYKEKYNSWINSESINEETKNELKAICDEKEIEDRFYKDLEFGTGGLRGVIGAGSNRMNVYSVSKATQGFANYLNENFN KPAVAIAYDSRNMSKEFAKAAALTLCANNVKVYLYESLRPTPVLSFATRELKCSGGIVVTASHNPKQYNGYKVYDEFGGQ VTDDKANKIITCVNQIEDFSQIKIIDEKDALEKGLLEYVGEELDKTYMEKVKSLTIRKELVSEKANTLNVIYTPIHGSGN VPVRRVLKELGYTNVEVVKEQEAPDGNFPTASYPNPENPDVFKLALNMAQSTNPDIIFGTDPDCDRIGVVVKDSKGEYKV LTGNQTGLLLTHYILSSLKETNKLPENGVVIKTIVTTEGAKAIADDFNIEILDVLTGFKYIGEKIREFKESGEYTYLFGF EESYGYLAGDFVRDKDAVIASMLICEMCLYYKEHGKSLYDALIELYEKYGYFKETLVSLELAGKEGQEKIASCIDAMRNS NITEINNVKVVKKLDYKLSTDEDIINGTKVAINLPKSNVLKFILEDDSYFVVRPSGTEPKMKVYLSIKGNSVTDAEKQIS EFKENVMNLINEKLN
Specific function: Catalyzes the interconversion between glucose-6- phosphate and alpha-glucose-1-phosphate. This is the first step in the biosynthesis of diglucosyl-diacylglycerol (Glc2-DAG), i.e. the predominant glycolipid found in B.subtilis membrane, which is also used
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI63055049, Length=583, Percent_Identity=31.9039451114923, Blast_Score=268, Evalue=8e-72, Organism=Homo sapiens, GI31377548, Length=560, Percent_Identity=31.6071428571429, Blast_Score=256, Evalue=4e-68, Organism=Escherichia coli, GI1788361, Length=379, Percent_Identity=27.1767810026385, Blast_Score=74, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71993870, Length=561, Percent_Identity=31.9073083778966, Blast_Score=266, Evalue=2e-71, Organism=Caenorhabditis elegans, GI71993878, Length=304, Percent_Identity=33.5526315789474, Blast_Score=169, Evalue=4e-42, Organism=Saccharomyces cerevisiae, GI6323934, Length=584, Percent_Identity=32.0205479452055, Blast_Score=252, Evalue=9e-68, Organism=Drosophila melanogaster, GI20129809, Length=589, Percent_Identity=29.8811544991511, Blast_Score=238, Evalue=8e-63, Organism=Drosophila melanogaster, GI24651977, Length=458, Percent_Identity=31.0043668122271, Blast_Score=225, Evalue=7e-59, Organism=Drosophila melanogaster, GI24653722, Length=561, Percent_Identity=28.8770053475936, Blast_Score=219, Evalue=4e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 64549; Mature: 64549
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYKEKYNSWINSESINEETKNELKAICDEKEIEDRFYKDLEFGTGGLRGVIGAGSNRMN CCHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEECCCCCEE VYSVSKATQGFANYLNENFNKPAVAIAYDSRNMSKEFAKAAALTLCANNVKVYLYESLRP EEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHEECCEEEEEEECCCC TPVLSFATRELKCSGGIVVTASHNPKQYNGYKVYDEFGGQVTDDKANKIITCVNQIEDFS CCCHHHHHHEEEECCCEEEEECCCCCCCCCEEEHHHHCCEECCCHHHHHHHHHHHHCCCH QIKIIDEKDALEKGLLEYVGEELDKTYMEKVKSLTIRKELVSEKANTLNVIYTPIHGSGN HEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC VPVRRVLKELGYTNVEVVKEQEAPDGNFPTASYPNPENPDVFKLALNMAQSTNPDIIFGT CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECC DPDCDRIGVVVKDSKGEYKVLTGNQTGLLLTHYILSSLKETNKLPENGVVIKTIVTTEGA CCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC KAIADDFNIEILDVLTGFKYIGEKIREFKESGEYTYLFGFEESYGYLAGDFVRDKDAVIA HHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEHHHHCCHHHHHH SMLICEMCLYYKEHGKSLYDALIELYEKYGYFKETLVSLELAGKEGQEKIASCIDAMRNS HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHHHHEECCCCCHHHHHHHHHHHHCC NITEINNVKVVKKLDYKLSTDEDIINGTKVAINLPKSNVLKFILEDDSYFVVRPSGTEPK CCCEECCEEEEEEECCCCCCCCHHCCCCEEEEECCHHHEEEEEEECCCEEEEECCCCCCC MKVYLSIKGNSVTDAEKQISEFKENVMNLINEKLN EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDYKEKYNSWINSESINEETKNELKAICDEKEIEDRFYKDLEFGTGGLRGVIGAGSNRMN CCHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEECCCCCEE VYSVSKATQGFANYLNENFNKPAVAIAYDSRNMSKEFAKAAALTLCANNVKVYLYESLRP EEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHEECCEEEEEEECCCC TPVLSFATRELKCSGGIVVTASHNPKQYNGYKVYDEFGGQVTDDKANKIITCVNQIEDFS CCCHHHHHHEEEECCCEEEEECCCCCCCCCEEEHHHHCCEECCCHHHHHHHHHHHHCCCH QIKIIDEKDALEKGLLEYVGEELDKTYMEKVKSLTIRKELVSEKANTLNVIYTPIHGSGN HEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC VPVRRVLKELGYTNVEVVKEQEAPDGNFPTASYPNPENPDVFKLALNMAQSTNPDIIFGT CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECC DPDCDRIGVVVKDSKGEYKVLTGNQTGLLLTHYILSSLKETNKLPENGVVIKTIVTTEGA CCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC KAIADDFNIEILDVLTGFKYIGEKIREFKESGEYTYLFGFEESYGYLAGDFVRDKDAVIA HHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEHHHHCCHHHHHH SMLICEMCLYYKEHGKSLYDALIELYEKYGYFKETLVSLELAGKEGQEKIASCIDAMRNS HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHHHHEECCCCCHHHHHHHHHHHHCC NITEINNVKVVKKLDYKLSTDEDIINGTKVAINLPKSNVLKFILEDDSYFVVRPSGTEPK CCCEECCEEEEEEECCCCCCCCHHCCCCEEEEECCHHHEEEEEEECCCEEEEECCCCCCC MKVYLSIKGNSVTDAEKQISEFKENVMNLINEKLN EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 2127799 [H]